Strain identifier

BacDive ID: 11066

Type strain: Yes

Species: Aeromicrobium halocynthiae

Strain history: H. C. Kwon KME 001.

NCBI tax ID(s): 560557 (species)

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General

@ref: 17779

BacDive-ID: 11066

DSM-Number: 24822

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped

description: Aeromicrobium halocynthiae DSM 24822 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from marine ascidian Halocynthia roretzi.

NCBI tax id

  • NCBI tax id: 560557
  • Matching level: species

strain history

@refhistory
17779<- JCM <- <- H. C. Kwon; KME 001
67770H. C. Kwon KME 001.

doi: 10.13145/bacdive11066.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Nocardioidaceae
  • genus: Aeromicrobium
  • species: Aeromicrobium halocynthiae
  • full scientific name: Aeromicrobium halocynthiae Kim et al. 2010

@ref: 17779

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardioidaceae

genus: Aeromicrobium

species: Aeromicrobium halocynthiae

full scientific name: Aeromicrobium halocynthiae Kim et al. 2010

type strain: yes

Morphology

cell morphology

  • @ref: 29593
  • gram stain: positive
  • cell length: 4.1-6 µm
  • cell width: 0.4-0.5 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 29593
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17779BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
17779R2A MEDIUM (DSMZ Medium 830)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf

culture temp

@refgrowthtypetemperaturerange
17779positivegrowth25mesophilic
29593positivegrowth10-42
29593positiveoptimum25mesophilic
67770positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
29593positivegrowth05-10alkaliphile
29593positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29593
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29593
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29593NaClpositivegrowth0-6 %
29593NaClpositiveoptimum0-6 %

observation

@refobservation
29593aggregates in chains
67770quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2959330089acetate+carbon source
2959322599arabinose+carbon source
2959328757fructose+carbon source
2959317234glucose+carbon source
2959317754glycerol+carbon source
2959337684mannose+carbon source
2959333942ribose+carbon source
2959327082trehalose+carbon source
2959318222xylose+carbon source

metabolite production

  • @ref: 67770
  • Chebi-ID: 36257
  • metabolite: taurocholate
  • production: yes

enzymes

  • @ref: 29593
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
17779marine ascidian Halocynthia roretziHalocynthia roretzicoast of GangneungRepublic of KoreaKORAsia
67770Marine ascidian, Halocynthia roretziHalocynthia roretzicoast of GangneungRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Invertebrates (Other)#Tunicata

Safety information

risk assessment

  • @ref: 17779
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17779
  • description: Aeromicrobium halocynthiae strain KME 001 16S ribosomal RNA gene, partial sequence
  • accession: FJ042789
  • length: 1358
  • database: ena
  • NCBI tax ID: 560557

GC content

@refGC-contentmethod
1777975.9high performance liquid chromatography (HPLC)
2959375.9

External links

@ref: 17779

culture collection no.: DSM 24822, JCM 15749, KCCM 90079, KME 001

straininfo link

  • @ref: 80315
  • straininfo: 374132

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20081024Aeromicrobium halocynthiae sp. nov., a taurocholic acid-producing bacterium isolated from the marine ascidian Halocynthia roretzi.Kim SH, Yang HO, Sohn YC, Kwon HCInt J Syst Evol Microbiol10.1099/ijs.0.016618-02010Actinomycetales/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Taurocholic Acid/*biosynthesis, Urochordata/*microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny29289978Aeromicrobium panacisoli sp. nov. Isolated from Soil of Ginseng Cultivating Field.Siddiqi MZ, Lee SY, Choi KD, Im WTCurr Microbiol10.1007/s00284-017-1426-42017Actinomycetales/classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Panax/*growth & development, Phylogeny, Republic of Korea, *Soil MicrobiologyMetabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17779Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24822)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24822
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29593Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2598528776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
80315Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID374132.1StrainInfo: A central database for resolving microbial strain identifiers