Name: Aeromicrobium halocynthiae DSM 24822
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11066

Type strain:

Species: Aeromicrobium halocynthiae

Culture col. no.: DSM 24822, JCM 15749, KCCM 90079, KME 001

Strain history: H. C. Kwon KME 001.

NCBI tax ID(s): 560557 (species)

SI-ID 374132

JCM 15749

Section

Aeromicrobium halocynthiae DSM 24822 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from marine ascidian Halocynthia roretzi.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Aeromicrobium*
	Species	**Aeromicrobium halocynthiae**
	Full Scientific Name (LPSN)	Aeromicrobium halocynthiae Kim et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29593]	Gram stain	positive
[Ref.: #29593]	Cell length	4.1-6 µm
[Ref.: #29593]	Cell width	0.4-0.5 µm
[Ref.: #29593]	Cell shape	rod-shaped
[Ref.: #29593]	Motility	no

[Ref.: #29593]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17779]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17779]

Culture medium growth

[Ref.: #17779]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17779]

Culture medium composition

expand / minimize

[Ref.: #17779]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #17779]

Culture medium growth

[Ref.: #17779]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17779]	growth	25 °C
[Ref.: #29593]	growth	10-42 °C
[Ref.: #29593]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #17779]	Temperature range	mesophilic
[Ref.: #29593]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29593]			optimum	7
[Ref.: #29593]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29593]

Oxygen tolerance

aerobe

[Ref.: #29593]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29593]		NaCl		growth	0-6	%
[Ref.: #29593]		NaCl		optimum	0-6	%

[Ref.: #29593]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29593]	acetate ChEBI	+	carbon source
[Ref.: #29593]	arabinose ChEBI	+	carbon source
[Ref.: #29593]	fructose ChEBI	+	carbon source
[Ref.: #29593]	glucose ChEBI	+	carbon source
[Ref.: #29593]	glycerol ChEBI	+	carbon source
[Ref.: #29593]	mannose ChEBI	+	carbon source
[Ref.: #29593]	ribose ChEBI	+	carbon source
[Ref.: #29593]	trehalose ChEBI	+	carbon source
[Ref.: #29593]	xylose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #67770]		taurocholate ChEBI	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29593]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17779]	Sample type/isolated from	marine ascidian Halocynthia roretzi
[Ref.: #17779]	Host species	Halocynthia roretzi
[Ref.: #17779]	Geographic location (country and/or sea, region)	coast of Gangneung
[Ref.: #17779]	Country	Republic of Korea
[Ref.: #17779]	Country ISO 3 Code	KOR
[Ref.: #17779]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Marine ascidian, Halocynthia roretzi
[Ref.: #67770]	Host species	Halocynthia roretzi
[Ref.: #67770]	Geographic location (country and/or sea, region)	coast of Gangneung
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Tunicata

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17779]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17779]	Aeromicrobium halocynthiae strain KME 001 16S ribosomal RNA gene, partial sequence	FJ042789	1358	ENA	560557 tax ID

[Ref.: #17779]	GC-content	75.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29593]	GC-content	75.9 mol%

Availability in culture collections External links

[Ref.: #17779]

Culture collection no.

DSM 24822, JCM 15749, KCCM 90079, KME 001

[Ref.: #80315]

SI-ID 374132

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aeromicrobium panacisoli sp. nov. Isolated from Soil of Ginseng Cultivating Field.	Siddiqi MZ, Lee SY, Choi KD, Im WT	Curr Microbiol	10.1007/s00284-017-1426-4	2017	*
Phylogeny	Aeromicrobium halocynthiae sp. nov., a taurocholic acid-producing bacterium isolated from the marine ascidian Halocynthia roretzi.	Kim SH, Yang HO, Sohn YC, Kwon HC	Int J Syst Evol Microbiol	10.1099/ijs.0.016618-0	2010	*

References

#17779

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24822

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29593

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25985 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#80315

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID374132.1 )

#25985

IJSEM 2793 2010 ( DOI 10.1099/ijs.0.016618-0 , PubMed 20081024 )

* These data were automatically processed and therefore are not curated

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