Aeromicrobium halocynthiae (DSM 24822, JCM 15749, KCCM 90079)

Name: Aeromicrobium halocynthiae (DSM 24822, JCM 15749, KCCM 90079)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11066

Type strain

Culture col. no. DSM 24822 JCM 15749 KCCM 90079 KME 001

NCBI tax ID(s) 560557

Special Collections DSMZ JCM Literature strains

History DSMZ <- JCM <- <- H. C. Kwon; KME 001 JCM <-- H. C. Kwon KME 001.

Links

Aeromicrobium halocynthiae DSM 24822 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from marine ascidian Halocynthia roretzi.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 374132

DSM 24822,JCM 15749

@ref 20215

Last LPSN update 2026-05-29 08:27:28

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Aeromicrobium

Species Aeromicrobium halocynthiae

Full scientific name Aeromicrobium halocynthiae Kim et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
29593	positive	4.1-6 µm	0.4-0.5 µm	rod-shaped
125439	positive					99.094

Pigmentation

29593

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17779	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
17779	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17779	positive	growth	25
29593	positive	growth	10-42
29593	positive	optimum	25
67770	positive	growth	25

Culture pH

@ref	Ability	Type	PH	PH range
29593	positive	optimum	7
29593	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29593	aerobe
125439	obligate aerobe	95.663

Spore formation

29593

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29593	NaCl	positive	growth	0-6 %
29593	NaCl	positive	optimum	0-6 %

Observation

@ref	Observation
29593	aggregates in chains
67770	quinones: MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29593	30089 ChEBI	acetate	+	carbon source
29593	22599 ChEBI	arabinose	+	carbon source
29593	28757 ChEBI	fructose	+	carbon source
29593	17234 ChEBI	glucose	+	carbon source
29593	17754 ChEBI	glycerol	+	carbon source
29593	37684 ChEBI	mannose	+	carbon source
29593	33942 ChEBI	ribose	+	carbon source
29593	27082 ChEBI	trehalose	+	carbon source
29593	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67770	36257 ChEBI	taurocholate

Enzymes

@ref	Value	Activity	Ec
29593	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Tunicata

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
17779	marine ascidian Halocynthia roretzi	Halocynthia roretzi	coast of Gangneung	Republic of Korea	KOR	Asia
67770	Marine ascidian, Halocynthia roretzi	Halocynthia roretzi	coast of Gangneung	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17779	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953138v1 assembly for Aeromicrobium halocynthiae JCM 15749	scaffold	GCA_039531385	560557	68.65

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17779	Aeromicrobium halocynthiae strain KME 001 16S ribosomal RNA gene, partial sequence	FJ042789	1358		560557
124043	Aeromicrobium halocynthiae strain KME 001 16S ribosomal RNA gene, partial sequence.	PQ524542	599		560557

GC content

@ref	GC-content (mol%)	Method
17779	75.9	high performance liquid chromatography (HPLC)
29593	75.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3953138v1 assembly for Aeromicrobium halocynthiae JCM 15749
NCBI: GCA_039531385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.66	no
125439	gram_stain	BacteriaNetⓘ	positive	99.09	no
125439	spore_formation	BacteriaNetⓘ	no	84.42	no
125439	motility	BacteriaNetⓘ	no	84.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dynamics of the intratumoural microbiome across malignant transformation and treatment in breast cancer.	Quan L, Shi M, Yang Z, Rong H, Zhou J, Sang D, Xu J, Yue J, Chen S, Liu J, Yuan P.	Clin Transl Med	10.1002/ctm2.70492	2025
	A nomogram prediction model for embryo implantation outcomes based on the cervical microbiota of the infertile patients during IVF-FET.	Wu Y, Shi L, Jin Z, Chen W, Wang F, Wu H, Li H, Zhang C, Zhu R.	Microbiol Spectr	10.1128/spectrum.01462-24	2025
Pathogenicity	Antibacterial Activities of Bacteria Isolated from the Marine Sponges Isodictya compressa and Higginsia bidentifera Collected from Algoa Bay, South Africa.	Matobole RM, van Zyl LJ, Parker-Nance S, Davies-Coleman MT, Trindade M.	Mar Drugs	10.3390/md15020047	2017
	Biofilm Formation and Detachment in Gram-Negative Pathogens Is Modulated by Select Bile Acids.	Sanchez LM, Cheng AT, Warner CJ, Townsley L, Peach KC, Navarro G, Shikuma NJ, Bray WM, Riener RM, Yildiz FH, Linington RG.	PLoS One	10.1371/journal.pone.0149603	2016
Phylogeny	Aeromicrobium panacisoli sp. nov. Isolated from Soil of Ginseng Cultivating Field.	Siddiqi MZ, Lee SY, Choi KD, Im WT	Curr Microbiol	10.1007/s00284-017-1426-4	2017
Phylogeny	Aeromicrobium halocynthiae sp. nov., a taurocholic acid-producing bacterium isolated from the marine ascidian Halocynthia roretzi.	Kim SH, Yang HO, Sohn YC, Kwon HC	Int J Syst Evol Microbiol	10.1099/ijs.0.016618-0	2010

References

#17779	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24822
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25985	IJSEM 2793 2010 ( DOI 10.1099/ijs.0.016618-0 , PubMed 20081024 )
#29593	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25985
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aeromicrobium halocynthiae (DSM 24822, JCM 15749, KCCM 90079)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039531385

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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