Strain identifier
BacDive ID: 10746
Type strain: 
Species: Nocardia cyriacigeorgica
Strain history: <- R.E. Gordon <- NCTC <- R.H. Gorill
NCBI tax ID(s): 135487 (species)
version 8.1 (current version)
General
@ref: 10868
BacDive-ID: 10746
DSM-Number: 43208
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Nocardia cyriacigeorgica DSM 43208 is a spore-forming, mesophilic bacterium that was isolated from pus from empysema.
NCBI tax id
- NCBI tax id: 135487
- Matching level: species
strain history
- @ref: 10868
- history: <- R.E. Gordon <- NCTC <- R.H. Gorill
doi: 10.13145/bacdive10746.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Nocardia
- species: Nocardia cyriacigeorgica
- full scientific name: Nocardia cyriacigeorgica corrig. Yassin et al. 2001
synonyms
- @ref: 20215
- synonym: Nocardia cyriacigeorgici
@ref: 10868
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Nocardia
species: Nocardia cyriacigeorgica
full scientific name: Nocardia cyriacigeorgica Yassin et al. 2001
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 91.538 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 10868
- name: GYM+S MEDIUM (DSMZ Medium 214)
- growth: yes
- link: https://mediadive.dsmz.de/medium/214
- composition: Name: GYM+S MEDIUM (DSMZ Medium 214) Composition: Starch 20.0 g/l Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 10868
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 90 |
| 69480 | no | 95.105 |
Isolation, sampling and environmental information
isolation
- @ref: 10868
- sample type: pus from empysema
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Oral cavity and airways | #Lung |
| #Host Body Product | #Fluids |
taxonmaps
- @ref: 69479
- File name: preview.99_369.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_243;97_280;98_312;99_369&stattab=map
- Last taxonomy: Nocardia
- 16S sequence: Z82218
- Sequence Identity:
- Total samples: 780
- soil counts: 340
- aquatic counts: 144
- animal counts: 241
- plant counts: 55
Safety information
risk assessment
- @ref: 10868
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Nocardia cyriacigeorgica strain ATCC 14759 16S ribosomal RNA gene, partial sequence | AF162772 | 1406 | ena | 135487 |
| 20218 | Nocardia cyriacigeorgica strain DSM 43208 note copy 1 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536420 | 325 | ena | 135487 |
| 20218 | Nocardia cyriacigeorgica strain DSM 43208 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536421 | 322 | ena | 135487 |
| 20218 | Nocardia asteroides clone A5 16S ribosomal RNA gene, partial sequence | AY262326 | 500 | ena | 1824 |
| 20218 | Nocardia asteroides strain ATCC 14759 16S ribosomal RNA gene, partial sequence | DQ223862 | 606 | ena | 1824 |
| 20218 | Nocardia cyriacigeorgica strain ATCC 14759 16S ribosomal RNA gene, partial sequence | EF127493 | 1512 | ena | 135487 |
| 20218 | Nocardia cyriacigeorgica strain DSM 43208 16S ribosomal RNA gene, partial sequence | JN041555 | 462 | ena | 135487 |
| 20218 | N.asteroides ATCC 14759 DNA for 16S rRNA | Z82218 | 1318 | ena | 1824 |
Genome sequences
- @ref: 66792
- description: Nocardia cyriacigeorgica strain 3012STDY6756504
- accession: 135487.13
- assembly level: complete
- database: patric
- NCBI tax ID: 135487
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 90 | no |
| motile | no | 92.762 | no |
| gram-positive | yes | 89.912 | no |
| anaerobic | no | 99.167 | no |
| halophile | no | 91.472 | no |
| spore-forming | yes | 80.352 | no |
| thermophile | no | 98.781 | yes |
| glucose-util | yes | 86.438 | no |
| flagellated | no | 97.807 | no |
| aerobic | yes | 91.912 | no |
| glucose-ferment | no | 90.906 | no |
External links
@ref: 10868
culture collection no.: DSM 43208, ATCC 14759, DSM 439, NCTC 8595, DSM 43667
straininfo link
- @ref: 80014
- straininfo: 36166
literature
- Pubmed-ID: 32045646
- title: Microbiological profile of distinct virulence of Nocardia cyriacigeorgica strains in vivo and in vitro.
- authors: Han L, Ji X, Xu S, Fan S, Wang C, Wei K, Wang X, Song H, Zheng N, Sun L, Qiu X, Hou X, Li Z
- journal: Microb Pathog
- DOI: 10.1016/j.micpath.2020.104042
- year: 2020
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10868 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43208) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43208 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 80014 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36166.1 | StrainInfo: A central database for resolving microbial strain identifiers |