Name: Nocardia cyriacigeorgica DSM 43208
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 10746

Type strain:

Species: Nocardia cyriacigeorgica

Culture col. no.: DSM 43208, ATCC 14759, DSM 439, NCTC 8595, DSM 43667

Strain history: <- R.E. Gordon <- NCTC <- R.H. Gorill

NCBI tax ID(s): 135487 (species)

SI-ID 36166

ATCC 14759, NCTC 8595, CCUG 10103, CCUG 10118, CCM 3250, CCUG 27779, DSM 43208, DSM 43667, DSM 439, NCIMB 12913, IMET7140

Special Collections

DSMZ

Other strains from Nocardia cyriacigeorgica

Section

When using BacDive for research please cite our paper

Nocardia cyriacigeorgica DSM 43208 is a mesophilic bacterium that was isolated from pus from empysema.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Nocardia*
	Species	**Nocardia cyriacigeorgica**
	Full Scientific Name (LPSN)	Nocardia cyriacigeorgica corrig. Yassin et al. 2001

Synonym

Nocardia cyriacigeorgici

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	positive Confidence in %93.149

[Ref.: #125438]	Motility	no Confidence in %92

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10868]

Culture medium

GYM+S MEDIUM (DSMZ Medium 214)

[Ref.: #10868]

Culture medium growth

[Ref.: #10868]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10868]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10868]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125438]

Oxygen tolerance

aerobe Confidence in %91.188

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10868]	Sample type/isolated from	pus from empysema
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Oral cavity and airways	#Lung
#Host Body Product	#Fluids	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Z82218 (>99% sequence identity) for Nocardia from Microbeatlas

Aquatic Samples	144
Soil Samples	340
Animal Samples	241
Plant Samples	55
Total Samples	780

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10868]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Nocardia asteroides strain ATCC 14759 16S ribosomal RNA gene, partial sequence	DQ223862	606	GenBank ENA	1824 tax ID	*
[Ref.: #20218]	Nocardia cyriacigeorgica strain ATCC 14759 16S ribosomal RNA gene, partial sequence	AF162772	1406	GenBank ENA	135487 tax ID	*
[Ref.: #20218]	Nocardia asteroides clone A5 16S ribosomal RNA gene, partial sequence	AY262326	500	GenBank ENA	1824 tax ID	*
[Ref.: #20218]	Nocardia cyriacigeorgica strain DSM 43208 note copy 1 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF536420	325	GenBank ENA	135487 tax ID	*
[Ref.: #20218]	Nocardia cyriacigeorgica strain DSM 43208 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF536421	322	GenBank ENA	135487 tax ID	*
[Ref.: #20218]	N.asteroides ATCC 14759 DNA for 16S rRNA	Z82218	1318	GenBank ENA	1824 tax ID	*
[Ref.: #20218]	Nocardia cyriacigeorgica strain ATCC 14759 16S ribosomal RNA gene, partial sequence	EF127493	1512	GenBank ENA	135487 tax ID	*
[Ref.: #124043]	Nocardia cyriacigeorgica strain 06-14238 16S ribosomal RNA gene, partial sequence.	EF127494	1512	GenBank ENA	135487 tax ID	*
[Ref.: #124043]	Nocardia cyriacigeorgica strain 06-14238 16S ribosomal RNA gene, partial sequence.	EF127495	1512	GenBank ENA	135487 tax ID	*
[Ref.: #124043]	Nocardia cyriacigeorgica strain 06-14238 16S ribosomal RNA gene, partial sequence.	EF127496	1512	GenBank ENA	135487 tax ID	*
[Ref.: #124043]	Nocardia cyriacigeorgica strain 06-14238 16S ribosomal RNA gene, partial sequence.	EF127497	1512	GenBank ENA	135487 tax ID	*
[Ref.: #124043]	Nocardia cyriacigeorgica strain 06-14238 16S ribosomal RNA gene, partial sequence.	EF127498	1512	GenBank ENA	135487 tax ID	*
[Ref.: #124043]	Nocardia cyriacigeorgica strain 06-14238 16S ribosomal RNA gene, partial sequence.	EF127499	1512	GenBank ENA	135487 tax ID	*
[Ref.: #124043]	Nocardia cyriacigeorgica strain 06-14238 16S ribosomal RNA gene, partial sequence.	EF127500	1512	GenBank ENA	135487 tax ID	*
[Ref.: #124043]	Nocardia cyriacigeorgica strain 06-14238 16S ribosomal RNA gene, partial sequence.	EF127501	1512	GenBank ENA	135487 tax ID	*
[Ref.: #124043]	Nocardia cyriacigeorgica strain 06-14238 16S ribosomal RNA gene, partial sequence.	EF127502	1512	GenBank ENA	135487 tax ID	*
[Ref.: #20218]	Nocardia cyriacigeorgica strain DSM 43208 16S ribosomal RNA gene, partial sequence	JN041555	462	GenBank ENA	135487 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nocardia cyriacigeorgica strain 3012STDY6756504	135487.13	complete	PATRIC	135487 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardia cyriacigeorgica strain 3012STDY6756504 PATRIC: 135487.13
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	93.149	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	98.366	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	62.895	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	91.188	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.994	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	92	no

Availability in culture collections External links

[Ref.: #10868]

Culture collection no.

DSM 43208, ATCC 14759, DSM 439, NCTC 8595, DSM 43667

[Ref.: #80014]

SI-ID 36166

Literature:

	Title	Authors	Journal	DOI	Year
	Microbiological profile of distinct virulence of Nocardia cyriacigeorgica strains in vivo and in vitro.	Han L, Ji X, Xu S, Fan S, Wang C, Wei K, Wang X, Song H, Zheng N, Sun L, Qiu X, Hou X, Li Z	Microb Pathog	10.1016/j.micpath.2020.104042	2020	*

References

#10868

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43208

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80014

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36166.1 )

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

* These data were automatically processed and therefore are not curated

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Nocardia cyriacigeorgica strain 3012STDY6756504

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