Strain identifier
BacDive ID: 10664
Type strain: 
Species: Nocardia farcinica
Strain Designation: S644
Strain history: <- L. Ettlinger, LBG <- R. Hütter, ETH <- R.E. Gordon
NCBI tax ID(s): 37329 (species)
General
@ref: 10792
BacDive-ID: 10664
DSM-Number: 43131
keywords: 16S sequence, Bacteria, mesophilic, human pathogen
description: Nocardia farcinica S644 is a mesophilic human pathogen of the family Nocardiaceae.
NCBI tax id
- NCBI tax id: 37329
- Matching level: species
strain history
- @ref: 10792
- history: <- L. Ettlinger, LBG <- R. Hütter, ETH <- R.E. Gordon
doi: 10.13145/bacdive10664.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Nocardia
- species: Nocardia farcinica
- full scientific name: Nocardia farcinica Trevisan 1889 (Approved Lists 1980)
@ref: 10792
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Nocardia
species: Nocardia farcinica
full scientific name: Nocardia farcinica Trevisan 1889 emend. Nouioui et al. 2018
strain designation: S644
type strain: no
Culture and growth conditions
culture medium
- @ref: 10792
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 10792
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 44144 C16:0 27.2 16 44144 C18:0 6 18 44144 C16:1 ω7c/C15:0 ISO 2OH 37.1 15.85 44144 C18:1 ω9c 5.1 17.769 44144 C18:2 ω6,9c/C18:0 ANTE 3.1 17.724 44144 TBSA 10Me18:0 21.6 18.392 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
- @ref: 44144
- sampling date: 1944
- geographic location: North Carolina
- country: USA
- origin.country: USA
- continent: North America
Safety information
risk assessment
- @ref: 10792
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Nocardia farcinica strain DSM 43131 note copy 1 rrnC operon, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536435 | 325 | ena | 37329 |
| 20218 | Nocardia farcinica strain DSM 43131 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536436 | 305 | ena | 37329 |
| 20218 | Nocardia farcinica strain DSM 43131 note copy 3 rrnA operon, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536437 | 332 | ena | 37329 |
External links
@ref: 10792
culture collection no.: DSM 43131, LBG A 3052, NCTC 6761, CCUG 222, ETH 27045
straininfo link
- @ref: 79934
- straininfo: 50183
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10792 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43131) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43131 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 44144 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 222) | https://www.ccug.se/strain?id=222 | |||
| 79934 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50183.1 | StrainInfo: A central database for resolving microbial strain identifiers |