Strain identifier
BacDive ID: 10644
Type strain: 
Species: Nocardia asteroides
Strain history: <- IMET <- CIP
NCBI tax ID(s): 1824 (species)
version 8.1 (current version)
General
@ref: 12283
BacDive-ID: 10644
DSM-Number: 46010
keywords: genome sequence, Bacteria, spore-forming, mesophilic, human pathogen
description: Nocardia asteroides DSM 46010 is a spore-forming, mesophilic human pathogen that was isolated from brain abscess.
NCBI tax id
- NCBI tax id: 1824
- Matching level: species
strain history
- @ref: 12283
- history: <- IMET <- CIP
doi: 10.13145/bacdive10644.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Nocardia
- species: Nocardia asteroides
- full scientific name: Nocardia asteroides (Eppinger 1891) Blanchard 1896 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Cladothrix asteroides
@ref: 12283
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Nocardia
species: Nocardia asteroides
full scientific name: Nocardia asteroides (Eppinger 1891) Blanchard 1896 emend. Nouioui et al. 2018
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 90.454 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 12283
- name: ORGANIC MEDIUM 79 (DSMZ Medium 426)
- growth: yes
- link: https://mediadive.dsmz.de/medium/426
- composition: Name: ORGANIC MEDIUM 79 (DSMZ Medium 426) Composition: Agar 15.0 g/l Peptone 10.0 g/l Dextrose 10.0 g/l NaCl 6.0 g/l Yeast extract 2.0 g/l Casein peptone 2.0 g/l Distilled water
culture temp
- @ref: 12283
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | no | 93.104 |
Isolation, sampling and environmental information
isolation
- @ref: 12283
- sample type: brain abscess
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Other | #Abscess |
| #Host Body-Site | #Organ | #Brain |
Safety information
risk assessment
- @ref: 12283
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Nocardia asteroides strain FDAARGOS_1485 | 1824.12 | complete | patric | 1824 |
| 66792 | Nocardia asteroides strain FDAARGOS_1485 | 1824.17 | complete | patric | 1824 |
| 66792 | Nocardia asteroides strain FDAARGOS_1485 | 1824.16 | complete | patric | 1824 |
| 66792 | Nocardia asteroides strain FDAARGOS_1485 | 1824.15 | complete | patric | 1824 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 93.321 | no |
| gram-positive | yes | 85.627 | no |
| anaerobic | no | 98.783 | no |
| aerobic | yes | 91.199 | no |
| halophile | no | 94.289 | no |
| spore-forming | yes | 77.347 | no |
| glucose-util | yes | 87.934 | no |
| flagellated | no | 97.865 | no |
| thermophile | no | 99.025 | yes |
| glucose-ferment | no | 91.046 | no |
External links
@ref: 12283
culture collection no.: DSM 46010, CIP 369, IMET 7158
straininfo link
- @ref: 79914
- straininfo: 50691
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 12283 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46010) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46010 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 79914 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50691.1 | StrainInfo: A central database for resolving microbial strain identifiers |