Strain identifier

BacDive ID: 10546

Type strain: No

Species: Gordonia bronchialis

Strain Designation: 50017

Strain history: CIP <- 1995, DSM <- IMET <- M. Tsukamura: strain 50017, Rhodococcus bronchialis

NCBI tax ID(s): 2054 (species)

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General

@ref: 12401

BacDive-ID: 10546

DSM-Number: 46036

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Gordonia bronchialis 50017 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from human sputum.

NCBI tax id

  • NCBI tax id: 2054
  • Matching level: species

strain history

@refhistory
12401<- IMET <- M. Tsukamura, 50017
117052CIP <- 1995, DSM <- IMET <- M. Tsukamura: strain 50017, Rhodococcus bronchialis

doi: 10.13145/bacdive10546.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Gordoniaceae
  • genus: Gordonia
  • species: Gordonia bronchialis
  • full scientific name: Gordonia bronchialis corrig. (Tsukamura 1971) Stackebrandt et al. 1989

  • synonyms

    @refsynonym
    20215Gordona bronchialis
    20215Rhodococcus bronchialis

@ref: 12401

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Gordoniaceae

genus: Gordonia

species: Gordonia bronchialis

full scientific name: Gordonia bronchialis (Tsukamura 1971) Stackebrandt et al. 1989 emend. Nouioui et al. 2018

strain designation: 50017

type strain: no

Morphology

cell morphology

  • @ref: 117052
  • gram stain: positive
  • cell shape: rod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12401ORGANIC MEDIUM 79 (DSMZ Medium 426)yeshttps://mediadive.dsmz.de/medium/426Name: ORGANIC MEDIUM 79 (DSMZ Medium 426) Composition: Agar 15.0 g/l Peptone 10.0 g/l Dextrose 10.0 g/l NaCl 6.0 g/l Yeast extract 2.0 g/l Casein peptone 2.0 g/l Distilled water
39075MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
117052CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
12401positivegrowth28mesophilic
39075positivegrowth30mesophilic
117052positivegrowth30-41
117052nogrowth10psychrophilic
117052nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 117052
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
117052NaClpositivegrowth0-6 %
117052NaClnogrowth8 %
117052NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11705216947citrate-carbon source
1170524853esculin-hydrolysis
11705217632nitrate+reduction
11705216301nitrite-reduction
117052132112sodium thiosulfate+builds gas from

metabolite production

  • @ref: 117052
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11705215688acetoin-
11705217234glucose-

enzymes

@refvalueactivityec
117052oxidase-
117052alcohol dehydrogenase-1.1.1.1
117052gelatinase-
117052amylase-
117052DNase-
117052caseinase-3.4.21.50
117052catalase+1.11.1.6
117052gamma-glutamyltransferase-2.3.2.2
117052lecithinase-
117052lysine decarboxylase-4.1.1.18
117052ornithine decarboxylase-4.1.1.17
117052tryptophan deaminase-
117052urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
117052-+++++-+--++---++---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
117052++-++---------------------------+----------------+-------------------------+---++-------+-+-----+--

Isolation, sampling and environmental information

isolation

@refsample typeisolation date
12401human sputum
117052Human, Sputum1979

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Sputum

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
124012Risk group (German classification)
1170521Risk group (French classification)

External links

@ref: 12401

culture collection no.: DSM 46036, CIP 104659, IMET 7421, Tsukamura 50017, Tsukamura E3924

straininfo link

  • @ref: 79822
  • straininfo: 50710

Reference

@idauthorscataloguedoi/urltitle
12401Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46036)https://www.dsmz.de/collection/catalogue/details/culture/DSM-46036
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39075Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16592
68382Automatically annotated from API zym
79822Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50710.1StrainInfo: A central database for resolving microbial strain identifiers
117052Curators of the CIPCollection of Institut Pasteur (CIP 104659)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104659