Strain identifier

BacDive ID: 10487

Type strain: Yes

Species: Neisseria animalis

Strain Designation: NA1, 1411

Strain history: CIP <- 1972, ATCC <- M.J. Pelczar: strain NA1 <- P. Hauduroy: strain 1411

NCBI tax ID(s): 492 (species)

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General

@ref: 16828

BacDive-ID: 10487

DSM-Number: 23392

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Neisseria animalis NA1 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from guinea-pig.

NCBI tax id

  • NCBI tax id: 492
  • Matching level: species

strain history

@refhistory
16828<- CCUG <- U. Berger, Heidelberg, Germany
116393CIP <- 1972, ATCC <- M.J. Pelczar: strain NA1 <- P. Hauduroy: strain 1411

doi: 10.13145/bacdive10487.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Neisseriaceae
  • genus: Neisseria
  • species: Neisseria animalis
  • full scientific name: Neisseria animalis Berger 1960 (Approved Lists 1980)

@ref: 16828

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Neisseriaceae

genus: Neisseria

species: Neisseria animalis

full scientific name: Neisseria animalis Berger 1960

strain designation: NA1, 1411

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.995

colony morphology

  • @ref: 16828
  • type of hemolysis: gamma

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16828BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
16828COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
36066MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
116393CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
16828positivegrowth37mesophilic
36066positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 16828
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
16828catalase+1.11.1.6
16828cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377beta-galactosidase-3.2.1.23
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
16828++/--+---+/---+--
16828-++/--+---+/---+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
16828guinea-pig
44278Guinea-pig
116393Animal, Guinea pigHamburgGermanyDEUEurope1960

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Rodentia (Other)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
168281Risk group (German classification)
1163931Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Neisseria animalis 16S rRNA gene, partialAJ247234457ena492
16828Neisseria animalis 16S rRNA gene (partial), strain NCTC10212AJ2392881355ena492

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Neisseria animalis ATCC 49930GCA_008806995completencbi492
66792Neisseria animalis NCTC10212GCA_900636515completencbi492
66792Neisseria animalis DSM 23392GCA_003795365contigncbi492
66792Neisseria animalis strain ATCC 49930492.10completepatric492
66792Neisseria animalis strain DSM 23392492.7wgspatric492
66792Neisseria animalis strain NCTC10212492.8completepatric492
66792Neisseria animalis NCTC 102122896579436completeimg492

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno85.703no
flagellatedno92.855no
gram-positiveno98.575no
anaerobicno96.971yes
aerobicno93.195yes
halophileno67.891no
spore-formingno97.626no
thermophileno99.513no
glucose-utilyes56.406no
glucose-fermentno86.606no

External links

@ref: 16828

culture collection no.: DSM 23392, ATCC 49930, CCUG 808, CIP 72.15, NCTC 10212, CCUG 26879, ATCC 19573

straininfo link

  • @ref: 79764
  • straininfo: 377846

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16828Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23392)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23392
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36066Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10633
44278Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 808)https://www.ccug.se/strain?id=808
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
79764Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID377846.1StrainInfo: A central database for resolving microbial strain identifiers
116393Curators of the CIPCollection of Institut Pasteur (CIP 72.15)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2072.15