Strain identifier

BacDive ID: 10457

Type strain: Yes

Species: Conchiformibius kuhniae

Strain history: IAM 15037 <-- ATCC 29437 <-- D. A. Kuhn 19 (Simonsiella sp.).

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General

@ref: 6978

BacDive-ID: 10457

DSM-Number: 17694

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Conchiformibius kuhniae DSM 17694 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from oral cavity of cats.

NCBI tax id

NCBI tax idMatching level
211502species
1121351strain

strain history

@refhistory
6978<- IAM <- D. A. Kuhn
67770IAM 15037 <-- ATCC 29437 <-- D. A. Kuhn 19 (Simonsiella sp.).

doi: 10.13145/bacdive10457.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Neisseriaceae
  • genus: Conchiformibius
  • species: Conchiformibius kuhniae
  • full scientific name: Conchiformibius kuhniae corrig. Xie and Yokota 2005
  • synonyms

    • @ref: 20215
    • synonym: Conchiformibium kuhniae

@ref: 6978

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Neisseriaceae

genus: Conchiformibius

species: Conchiformibius kuhniae

full scientific name: Conchiformibius kuhniae Xie and Yokota 2005

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.886

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_17694_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_17694_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_17694_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_17694_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_17694_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 6978
  • name: COLUMBIA BLOOD AGAR (DSMZ Medium 429)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/429
  • composition: Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
6978positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 6978
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.972

observation

  • @ref: 67770
  • observation: quinones: Q-8

Isolation, sampling and environmental information

isolation

@refsample type
6978oral cavity of cats
67770Cat

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Felidae (Cat)
#Host Body-Site#Oral cavity and airways

Safety information

risk assessment

  • @ref: 6978
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6978
  • description: Simonsiella sp. ATCC 29437 16S ribosomal RNA gene, partial sequence
  • accession: AF328150
  • length: 1464
  • database: ena
  • NCBI tax ID: 211502

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Conchiformibius kuhniae DSM 176941121351.3wgspatric1121351
66792Conchiformibius kuhniae DSM 176942524023156draftimg1121351
67770Conchiformibius kuhniae DSM 17694GCA_000428785scaffoldncbi1121351

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno87.408no
flagellatedno95.057no
gram-positiveno98.697no
anaerobicno97.708yes
aerobicno85.075yes
halophileno73.097no
spore-formingno97.02no
thermophileno98.405yes
glucose-utilyes63.657no
glucose-fermentno89.762no

External links

@ref: 6978

culture collection no.: DSM 17694, IAM 15037, JCM 21500, ATCC 29437, ICPB 3619

straininfo link

  • @ref: 79734
  • straininfo: 39530

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6978Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17694)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17694
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
79734Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID39530.1StrainInfo: A central database for resolving microbial strain identifiers