Strain identifier
BacDive ID: 10457
Type strain: 
Species: Conchiformibius kuhniae
Strain history: IAM 15037 <-- ATCC 29437 <-- D. A. Kuhn 19 (Simonsiella sp.).
NCBI tax ID(s): 1121351 (strain), 211502 (species)
version 9.1 (current version)
General
@ref: 6978
BacDive-ID: 10457
DSM-Number: 17694
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative
description: Conchiformibius kuhniae DSM 17694 is an aerobe, Gram-negative bacterium that was isolated from oral cavity of cats.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1121351 | strain |
| 211502 | species |
strain history
| @ref | history |
|---|---|
| 6978 | <- IAM <- D. A. Kuhn |
| 67770 | IAM 15037 <-- ATCC 29437 <-- D. A. Kuhn 19 (Simonsiella sp.). |
doi: 10.13145/bacdive10457.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Neisseriales
- family: Neisseriaceae
- genus: Conchiformibius
- species: Conchiformibius kuhniae
- full scientific name: Conchiformibius kuhniae corrig. Xie and Yokota 2005
synonyms
- @ref: 20215
- synonym: Conchiformibium kuhniae
@ref: 6978
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Neisseriales
family: Neisseriaceae
genus: Conchiformibius
species: Conchiformibius kuhniae
full scientific name: Conchiformibius kuhniae Xie and Yokota 2005
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.483
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 66793 | EM_DSM_17694_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_17694_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_17694_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_17694_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_17694_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
- @ref: 6978
- name: COLUMBIA BLOOD AGAR (DSMZ Medium 429)
- growth: yes
- link: https://mediadive.dsmz.de/medium/429
- composition: Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 6978 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
- @ref: 6978
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 93.284 |
| 69481 | no | 100 |
observation
- @ref: 67770
- observation: quinones: Q-8
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 6978 | oral cavity of cats |
| 67770 | Cat |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Felidae (Cat) |
| #Host Body-Site | #Oral cavity and airways |
Safety information
risk assessment
- @ref: 6978
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6978
- description: Simonsiella sp. ATCC 29437 16S ribosomal RNA gene, partial sequence
- accession: AF328150
- length: 1464
- database: nuccore
- NCBI tax ID: 211502
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Conchiformibius kuhniae DSM 17694 | 1121351.3 | wgs | patric | 1121351 |
| 66792 | Conchiformibius kuhniae DSM 17694 | 2524023156 | draft | img | 1121351 |
| 67770 | Conchiformibius kuhniae DSM 17694 | GCA_000428785 | scaffold | ncbi | 1121351 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99.483 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.044 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.284 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 66.478 | yes |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.479 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 84.387 | no |
External links
@ref: 6978
culture collection no.: DSM 17694, IAM 15037, JCM 21500, ATCC 29437, ICPB 3619
straininfo link
- @ref: 79734
- straininfo: 39530
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6978 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17694) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17694 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 79734 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID39530.1 | StrainInfo: A central database for resolving microbial strain identifiers |