Strain identifier
BacDive ID: 10176
Type strain: 
Species: Enhygromyxa salina
Strain Designation: SHK-1
Strain history: T. Iizuka SHK-1.
NCBI tax ID(s): 215803 (species)
version 8.1 (current version)
General
@ref: 5761
BacDive-ID: 10176
DSM-Number: 15217
keywords: 16S sequence, Bacteria, mesophilic
description: Enhygromyxa salina SHK-1 is a mesophilic bacterium that was isolated from coastal mud.
NCBI tax id
- NCBI tax id: 215803
- Matching level: species
strain history
| @ref | history |
|---|---|
| 5761 | <- T. Iizuka; SHK-1 |
| 67770 | T. Iizuka SHK-1. |
doi: 10.13145/bacdive10176.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Myxococcales
- family: Nannocystaceae
- genus: Enhygromyxa
- species: Enhygromyxa salina
- full scientific name: Enhygromyxa salina Iizuka et al. 2003
@ref: 5761
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Myxococcales
family: Nannocystaceae
genus: Enhygromyxa
species: Enhygromyxa salina
full scientific name: Enhygromyxa salina Iizuka et al. 2003
strain designation: SHK-1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5761
- name: VY/4-SWS AGAR (DSMZ Medium 958)
- growth: yes
- link: https://mediadive.dsmz.de/medium/958
- composition: Name: VY/4-SWS AGAR (DSMZ Medium 958) Composition: NaCl 20.0 g/l Agar 15.0 g/l MgSO4 x 7 H2O 8.0 g/l Yeast cell paste 2.5 g/l CaCl2 x 2 H2O 1.0 g/l KCl 0.5 g/l NaHCO3 0.16 g/l KBr 0.08 g/l SrCl2 x 6 H2O 0.03 g/l Sodium beta-glycerophosphate 0.01 g/l Ferric citrate 0.01 g/l Cyanocobalamine 0.0005 g/l EDTA 0.0005 g/l FeSO4 x 7 H2O 0.0002 g/l H3BO3 3e-05 g/l CoCl2 x 6 H2O 2e-05 g/l ZnSO4 x 7 H2O 1e-05 g/l Na2MoO4 x 2 H2O 3e-06 g/l MnCl2 x 4 H2O 3e-06 g/l NiCl2 x 6 H2O 2e-06 g/l CuCl2 x 2 H2O 1e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5761 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 5761 | coastal mud | Saroma-ko, Hokkaido | Japan | JPN | Asia |
| 67770 | Wet black mud at a shore facing Saroma-ko lagoon | Japan | JPN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Mud (Sludge)
taxonmaps
- @ref: 69479
- File name: preview.99_29175.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_385;96_14372;97_17524;98_21768;99_29175&stattab=map
- Last taxonomy: Enhygromyxa salina subclade
- 16S sequence: AB097590
- Sequence Identity:
- Total samples: 212
- soil counts: 31
- aquatic counts: 166
- animal counts: 14
- plant counts: 1
Safety information
risk assessment
- @ref: 5761
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67770
- description: Enhygromyxa salina gene for 16S ribosomal RNA, strain:SHK-1
- accession: AB097590
- length: 1480
- database: ena
- NCBI tax ID: 215803
GC content
- @ref: 5761
- GC-content: 66.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 5761
culture collection no.: DSM 15217, JCM 11769, AJ 110011, CIP 108217
straininfo link
- @ref: 79554
- straininfo: 111778
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 12866845 | Enhygromyxa salina gen. nov., sp. nov., a slightly halophilic myxobacterium isolated from the coastal areas of Japan. | Iizuka T, Jojima Y, Fudou R, Tokura M, Hiraishi A, Yamanaka S | Syst Appl Microbiol | 10.1078/072320203322346038 | 2003 | Bacterial Typing Techniques, Base Composition, Calcium/pharmacology, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Japan, Magnesium/pharmacology, Molecular Sequence Data, Myxococcales/chemistry/classification/drug effects/*isolation & purification/ultrastructure, Pacific Ocean, Phenotype, Phylogeny, Ribotyping, Seawater/microbiology, Sodium Chloride/pharmacology, Species Specificity, Vitamin K 2/analysis, *Water Microbiology | Genetics |
| Phylogeny | 20948900 | Marine myxobacteria as a source of antibiotics--comparison of physiology, polyketide-type genes and antibiotic production of three new isolates of Enhygromyxa salina. | Schaberle TF, Goralski E, Neu E, Erol O, Holzl G, Dormann P, Bierbaum G, Konig GM | Mar Drugs | 10.3390/md8092466 | 2010 | Anti-Bacterial Agents/*biosynthesis/pharmacology, Base Composition, DNA, Bacterial/analysis/chemistry/genetics, DNA, Ribosomal/genetics, *Genes, Bacterial, Geologic Sediments/*microbiology, Myxococcales/cytology/genetics/*isolation & purification/*physiology, Phenotype, Phylogeny, Salt Tolerance, Seawater/microbiology, Sequence Analysis, DNA, Sodium Chloride | Phenotype |
| Phylogeny | 22821734 | Pseudenhygromyxa salsuginis gen. nov., sp. nov., a myxobacterium isolated from an estuarine marsh. | Iizuka T, Jojima Y, Hayakawa A, Fujii T, Yamanaka S, Fudou R | Int J Syst Evol Microbiol | 10.1099/ijs.0.040501-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Estuaries, Fatty Acids/analysis, Geologic Sediments/microbiology, Japan, Molecular Sequence Data, Myxococcales/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, *Water Microbiology, *Wetlands | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5761 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15217) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15217 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 79554 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID111778.1 | StrainInfo: A central database for resolving microbial strain identifiers |