Name: Kosakonia oryzendophytica REICA_082
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140802

Type strain:

Species: Kosakonia oryzendophytica

Strain Designation: REICA_082

Culture col. no.: LMG 26432, NCCB 100390

NCBI tax ID(s): 1005665 (species)

Kosakonia oryzendophytica REICA_082 is a motile bacterium of the family Enterobacteriaceae.

motile
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Kosakonia*
	Species	**Kosakonia oryzendophytica**
	Full Scientific Name (LPSN)	Kosakonia oryzendophytica (Hardoim et al. 2015) Li et al. 2016

Synonym

Enterobacter oryzendophyticus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.944

[Ref.: #69480]	Motility	yes Confidence in %94.67

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.726

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43582]	D-arabitol ChEBI	+	carbon source
[Ref.: #43582]	esculin ChEBI	+	hydrolysis
[Ref.: #43582]	L-fucose ChEBI	+	carbon source
[Ref.: #43582]	melibiose ChEBI	+	carbon source
[Ref.: #43582]	myo-inositol ChEBI	+	carbon source
[Ref.: #43582]	putrescine ChEBI	-	carbon source
[Ref.: #43582]	raffinose ChEBI	+	carbon source
[Ref.: #43582]	turanose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #43582]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43582]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43582]	ornithine decarboxylase	+	4.1.1.17

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kosakonia oryzendophytica REICA_082	GCA_900094925	scaffold	GenBank	1005665 tax ID	*
[Ref.: #66792]	Kosakonia oryzendophytica REICA_082	2617270737	draft	JGI IMG/M	1005665 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kosakonia oryzendophytica REICA_082 NCBI: GCA_900094925.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kosakonia oryzendophytica REICA_082 NCBI: GCA_900094925.1
[Ref.: #69480]	motile	yes	90.47	no
[Ref.: #69480]	flagellated	no	53.29	no
[Ref.: #69480]	gram-positive	no	98.332	no
[Ref.: #69480]	anaerobic	no	93.856	no
[Ref.: #69480]	aerobic	no	65.449	no
[Ref.: #69480]	halophile	no	93.193	no
[Ref.: #69480]	spore-forming	no	93.191	no
[Ref.: #69480]	glucose-ferment	yes	92.796	no
[Ref.: #69480]	thermophile	no	99.614	no
[Ref.: #69480]	glucose-util	yes	96.425	no

Availability in culture collections External links

[Ref.: #43582]

Culture collection no.

LMG 26432, NCCB 100390

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kosakonia pseudosacchari sp. nov., an endophyte of Zea mays.	Kampfer P, McInroy JA, Doijad S, Chakraborty T, Glaeser SP	Syst Appl Microbiol	10.1016/j.syapm.2015.09.004	2015	*
Phylogeny	The new species Enterobacter oryziphilus sp. nov. and Enterobacter oryzendophyticus sp. nov. are key inhabitants of the endosphere of rice.	Hardoim PR, Nazir R, Sessitsch A, Elhottova D, Korenblum E, van Overbeek LS, van Elsas JD	BMC Microbiol	10.1186/1471-2180-13-164	2013	*
Phylogeny	Reclassification of Enterobacter oryziphilus and Enterobacter oryzendophyticus as Kosakonia oryziphila comb. nov. and Kosakonia oryzendophytica comb. nov.	Li CY, Zhou YL, Ji J, Gu CT	Int J Syst Evol Microbiol	10.1099/ijsem.0.001054	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43582

Chun Yan Li, Yuan Liang Zhou, Jing Ji, Chun Tao Gu: Reclassification of Enterobacter oryziphilus and Enterobacter oryzendophyticus as Kosakonia oryziphila comb. nov. and Kosakonia oryzendophytica comb. nov.. IJSEM 66: 2780 - 2783 2016 ( DOI 10.1099/ijsem.0.001054 , PubMed 27045188 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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