Strain identifier

BacDive ID: 140802

Type strain: Yes

Species: Kosakonia oryzendophytica

Strain Designation: REICA_082

NCBI tax ID(s): 1005665 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 43582

BacDive-ID: 140802

keywords: genome sequence, Bacteria, motile

description: Kosakonia oryzendophytica REICA_082 is a motile bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 1005665
  • Matching level: species

doi: 10.13145/bacdive140802.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Kosakonia
  • species: Kosakonia oryzendophytica
  • full scientific name: Kosakonia oryzendophytica (Hardoim et al. 2015) Li et al. 2016

  • synonyms

    • @ref: 20215
    • synonym: Enterobacter oryzendophyticus

@ref: 43582

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Kosakonia

species: Kosakonia oryzendophytica

strain designation: REICA_082

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes94.67
6948099.944negative

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.726

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4358217148putrescine-carbon source
4358218333D-arabitol+carbon source
4358218287L-fucose+carbon source
4358228053melibiose+carbon source
4358217268myo-inositol+carbon source
4358216634raffinose+carbon source
4358232528turanose+carbon source
435824853esculin+hydrolysis

enzymes

@refvalueactivityec
43582arginine dihydrolase+3.5.3.6
43582lysine decarboxylase-4.1.1.18
43582ornithine decarboxylase+4.1.1.17

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kosakonia oryzendophytica REICA_082GCA_900094925scaffoldncbi1005665
66792Kosakonia oryzendophytica REICA_0822617270737draftimg1005665

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.47no
flagellatedno53.29no
gram-positiveno98.332no
anaerobicno93.856no
aerobicno65.449no
halophileno93.193no
spore-formingno93.191no
glucose-fermentyes92.796no
thermophileno99.614no
glucose-utilyes96.425no

External links

@ref: 43582

culture collection no.: LMG 26432, NCCB 100390

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23865888The new species Enterobacter oryziphilus sp. nov. and Enterobacter oryzendophyticus sp. nov. are key inhabitants of the endosphere of rice.Hardoim PR, Nazir R, Sessitsch A, Elhottova D, Korenblum E, van Overbeek LS, van Elsas JDBMC Microbiol10.1186/1471-2180-13-1642013Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics/physiology, Enterobacteriaceae/*classification/genetics/*isolation & purification, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza/*microbiology, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny26597455Kosakonia pseudosacchari sp. nov., an endophyte of Zea mays.Kampfer P, McInroy JA, Doijad S, Chakraborty T, Glaeser SPSyst Appl Microbiol10.1016/j.syapm.2015.09.0042015Alabama, Base Sequence, DNA Gyrase/genetics, DNA, Bacterial/genetics, DNA-Directed RNA Polymerases/genetics, Endophytes, Enterobacteriaceae/*classification/genetics/*isolation & purification, Multilocus Sequence Typing, Phylogeny, Plant Roots/*microbiology, Prokaryotic Initiation Factor-2/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Transcription Factors/genetics, Zea mays/*microbiologyTranscriptome
Phylogeny27045188Reclassification of Enterobacter oryziphilus and Enterobacter oryzendophyticus as Kosakonia oryziphila comb. nov. and Kosakonia oryzendophytica comb. nov.Li CY, Zhou YL, Ji J, Gu CTInt J Syst Evol Microbiol10.1099/ijsem.0.0010542016DNA, Bacterial/genetics, Enterobacter/classification, Enterobacteriaceae/*classification, Genes, Bacterial, Nucleic Acid Hybridization, *Phylogeny, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43582Chun Yan Li, Yuan Liang Zhou, Jing Ji, Chun Tao GuReclassification of Enterobacter oryziphilus and Enterobacter oryzendophyticus as Kosakonia oryziphila comb. nov. and Kosakonia oryzendophytica comb. nov.10.1099/ijsem.0.001054IJSEM 66: 2780-2783 201627045188
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1