Strain identifier
BacDive ID: 140802
Type strain: 
Species: Kosakonia oryzendophytica
Strain Designation: REICA_082
Culture col. no.: LMG 26432, NCCB 100390
version 5.0 (current version)
General
@ref: 43582
BacDive-ID: 140802
keywords: genome sequence, Bacteria
description: Kosakonia oryzendophytica REICA_082 is a bacterium of the family Enterobacteriaceae.
doi: 10.13145/bacdive140802.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Kosakonia
- species: Kosakonia oryzendophytica
- full scientific name: Kosakonia oryzendophytica (Hardoim et al. 2015) Li et al. 2016
synonyms
- @ref: 20215
- synonym: Enterobacter oryzendophyticus
@ref: 43582
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Kosakonia
species: Kosakonia oryzendophytica
strain designation: REICA_082
type strain: yes
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43582 | 17148 | putrescine | - | carbon source |
| 43582 | 18333 | D-arabitol | + | carbon source |
| 43582 | 18287 | L-fucose | + | carbon source |
| 43582 | 28053 | melibiose | + | carbon source |
| 43582 | 17268 | myo-inositol | + | carbon source |
| 43582 | 16634 | raffinose | + | carbon source |
| 43582 | 32528 | turanose | + | carbon source |
| 43582 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 43582 | arginine dihydrolase | + | 3.5.3.6 |
| 43582 | lysine decarboxylase | - | 4.1.1.18 |
| 43582 | ornithine decarboxylase | + | 4.1.1.17 |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Kosakonia oryzendophytica REICA_082 | GCA_900094925 | scaffold | ncbi | 1005665 |
| 66792 | Kosakonia oryzendophytica Kosakonia oryzendophytica LMG 26432T | GCA_900185945 | contig | ncbi | 1005665 |
| 66792 | Kosakonia oryzendophytica strain Kosakonia oryzendophytica LMG 26432T | 1005665.5 | wgs | patric | 1005665 |
| 66792 | Kosakonia oryzendophytica strain REICA_082 | 1005665.7 | wgs | patric | 1005665 |
| 66792 | Kosakonia oryzendophytica REICA_082 | 2617270737 | permanent | img | 1005665 |
External links
@ref: 43582
culture collection no.: LMG 26432, NCCB 100390
Reference
| @id | authors | title | doi/url | journal |
|---|---|---|---|---|
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | |
| 43582 | Chun Yan Li, Yuan Liang Zhou, Jing Ji, Chun Tao Gu | Reclassification of Enterobacter oryziphilus and Enterobacter oryzendophyticus as Kosakonia oryziphila comb. nov. and Kosakonia oryzendophytica comb. nov. | 10.1099/ijsem.0.001054 | IJSEM 66: 2780-2783 2016 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |