Strain identifier
BacDive ID: 14127
Type strain: 
Species: Pedobacter antarcticus
Strain Designation: 6B1Y
Strain history: <- S. Shivaji; 6B1Y; the strain designation 6B1Y does not appear in the original publication; 16S rDNA gene sequence is identical with that of the type strain of this species (HM448033) and indicates >99% similarity to Pedobacter piscium
NCBI tax ID(s): 34086 (species)
General
@ref: 5840
BacDive-ID: 14127
DSM-Number: 15311
keywords: psychrophilic, Bacteria, 16S sequence
description: Pedobacter antarcticus 6B1Y is a psychrophilic bacterium that was isolated from water sample.
strain history: <- S. Shivaji; 6B1Y; the strain designation 6B1Y does not appear in the original publication; 16S rDNA gene sequence is identical with that of the type strain of this species (HM448033) and indicates >99% similarity to Pedobacter piscium
doi: 10.13145/bacdive14127.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidetes
- domain: Bacteria
- phylum: Bacteroidetes
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Sphingobacterium
- species: Sphingobacterium antarcticum
- full scientific name: Sphingobacterium antarcticum corrig. Shivaji et al. 1992
synonyms
@ref synonym 20215 Pedobacter piscium 20215 Sphingobacterium antarcticus 20215 Sphingobacterium piscium 20215 Pedobacter antarcticus
@ref: 5840
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Pedobacter
species: Pedobacter antarcticus
full scientific name: Pedobacter antarcticus (Shivaji et al. 1992) Farfán et al. 2014
strain designation: 6B1Y
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link |
|---|---|---|---|
| 5840 | OXOID NUTRIENT BROTH (DSMZ Medium 948) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium948.pdf |
| 5840 | NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium605.pdf |
culture temp
- @ref: 5840
- growth: positive
- type: growth
- temperature: 22
- range: psychrophilic
Isolation, sampling and environmental information
isolation
- @ref: 5840
- sample type: water sample
- geographic location: Schirmacher Oasis
- continent: Australia and Oceania
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
Safety information
risk assessment
- @ref: 5840
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 5840 | Sphingobacterium antarcticum partial 16S rRNA gene, isolate 6B1Y | AJ576248 | 1478 | ena | 34086 |
| 5840 | Sphingobacterium antarcticum partial 16S rRNA gene, strain DSM15311 | FR733711 | 1509 | ena | 34086 |
GC content
- @ref: 5840
- GC-content: 40
External links
@ref: 5840
culture collection no.: DSM 15311
straininfo link
- @ref: 20218
- passport: http://www.straininfo.net/strains/692220
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5840 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15311) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15311 | |||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 |