Strain identifier
BacDive ID: 11998
Type strain: 
Species: Paenisporosarcina antarctica
Strain Designation: N-05
Strain history: D.-C. Zhang et al. N-05.
NCBI tax ID(s): 417367 (species)
version 7.1
General
@ref: 16084
BacDive-ID: 11998
DSM-Number: 21991
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, spore-forming, psychrophilic, Gram-positive, rod-shaped
description: Paenisporosarcina antarctica N-05 is a facultative anaerobe, spore-forming, psychrophilic bacterium that was isolated from Soil samples.
NCBI tax id
- NCBI tax id: 417367
- Matching level: species
strain history
| <- JCM/RIKEN <- D.-C. Zhang et al., Ocean Univ. China, Qingdao, P. R. China; N-05 |
| D.-C. Zhang et al. N-05. |
doi: 10.13145/bacdive11998.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Paenisporosarcina
- species: Paenisporosarcina antarctica
- full scientific name: Paenisporosarcina antarctica (Yu et al. 2008) Reddy et al. 2013
synonyms
- @ref: 20215
- synonym: Sporosarcina antarctica
@ref: 16084
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Caryophanaceae
genus: Paenisporosarcina
species: Paenisporosarcina antarctica
full scientific name: Paenisporosarcina antarctica (Yu et al. 2008) Reddy et al. 2013
strain designation: N-05
type strain: yes
Morphology
cell morphology
- @ref: 32646
- gram stain: positive
- cell length: 1.1-2.6 µm
- cell width: 0.3-0.6 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 32646
- production: yes
Culture and growth conditions
culture medium
- @ref: 16084
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16084 | positive | growth | 18 | psychrophilic |
| 32646 | positive | growth | 0-23 | psychrophilic |
| 32646 | positive | optimum | 17-18 | psychrophilic |
| 67770 | positive | growth | 22 | psychrophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32646 | positive | growth | 05-10 | alkaliphile |
| 32646 | positive | optimum | 06-08 |
Physiology and metabolism
oxygen tolerance
- @ref: 32646
- oxygen tolerance: facultative anaerobe
spore formation
- @ref: 32646
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32646 | NaCl | positive | growth | 0-9 % |
| 32646 | NaCl | positive | optimum | 0-9 % |
observation
| @ref | observation |
|---|---|
| 32646 | aggregates in chains |
| 67770 | quinones: MK-7 |
metabolite utilization
- @ref: 32646
- Chebi-ID: 17234
- metabolite: glucose
- utilization activity: +
- kind of utilization tested: carbon source
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32646 | alkaline phosphatase | + | 3.1.3.1 |
| 32646 | catalase | + | 1.11.1.6 |
| 32646 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | continent | latitude | longitude | country | origin.country |
|---|---|---|---|---|---|---|---|
| 16084 | Soil samples | West Antarctica, King George Island (62° 13' 31" S 58° 57' 08" W) | Australia and Oceania | -62.2253 | -58.9522 | ||
| 67770 | Soil samples collected off King George Island | west Antarctica (62° 13' 31" S 58° 57' 08" W) | Antarctica | -62.2253 | -58.9522 | Antarctica | ATA |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_4370.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1795;97_2149;98_3283;99_4370&stattab=map
- Last taxonomy: Paenisporosarcina
- 16S sequence: EF154512
- Sequence Identity:
- Total samples: 881
- soil counts: 516
- aquatic counts: 186
- animal counts: 148
- plant counts: 31
Safety information
risk assessment
- @ref: 16084
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16084
- description: Sporosarcina antarctica strain N-05 16S ribosomal RNA gene, partial sequence
- accession: EF154512
- length: 1446
- database: ena
- NCBI tax ID: 417367
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paenisporosarcina antarctica CGMCC 1.6503 | GCA_004367585 | complete | ncbi | 417367 |
| 66792 | Paenisporosarcina antarctica strain CGMCC 1.6503 | 417367.3 | complete | patric | 417367 |
| 66792 | Paenisporosarcina antarctica CGMCC 1.6503 | 2852116859 | complete | img | 417367 |
| 67770 | Paenisporosarcina antarctica strain CGMCC 1.6503 chromosome, complete genome | CP038015 | ena | 417367 | |
| 66792 | uncultured Lachnospiraceae bacterium RUG14859 | GCA_902803335 | contig | patric | 297314 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 16084 | 39.2 | thermal denaturation, midpoint method (Tm) |
| 32646 | 39.2 |
External links
@ref: 16084
culture collection no.: DSM 21991, JCM 14646, CGMCC 1.6503
straininfo link
- @ref: 20218
- passport: http://www.straininfo.net/strains/833687
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 18768614 | Sporosarcina antarctica sp. nov., a psychrophilic bacterium isolated from the Antarctic. | Yu Y, Xin YH, Liu HC, Chen B, Sheng J, Chi ZM, Zhou PJ, Zhang DC | Int J Syst Evol Microbiol | 10.1099/ijs.0.65838-0 | 2008 | Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Gram-Positive Bacteria/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Temperature, Vitamin K 2/analysis | Genetics |
| Phylogeny | 23355696 | Paenisporosarcina indica sp. nov., a psychrophilic bacterium from a glacier, and reclassification of Sporosarcina antarctica Yu et al., 2008 as Paenisporosarcina antarctica comb. nov. and emended description of the genus Paenisporosarcina. | Reddy GSN, Manasa BP, Singh SK, Shivaji S | Int J Syst Evol Microbiol | 10.1099/ijs.0.047514-0 | 2013 | Antarctic Regions, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Ice Cover/*microbiology, India, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Sporosarcina/classification, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 16084 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21991) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21991 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 28857 | 10.1099/ijs.0.65838-0 | 18768614 | |||||
| 32646 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 28857 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |