Paenisporosarcina antarctica (DSM 21991, JCM 14646, CGMCC 1.6503)

Name: Paenisporosarcina antarctica (DSM 21991, JCM 14646, CGMCC 1.6503)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11998

Type strain

Strain Designation N-05

Culture col. no. DSM 21991 JCM 14646 CGMCC 1.6503 N-05

NCBI tax ID(s) 417367

Special Collections DSMZ JCM Literature strains

History <- JCM/RIKEN <- D.-C. Zhang et al., Ocean Univ. China, Qingdao, P. R. China; N-05 D.-C. Zhang et al. N-05.

Links

Paenisporosarcina antarctica N-05 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from Soil samples.

spore-forming Gram-positive rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 358901

CGMCC 1.6503,JCM 14646,DSM 21991

@ref 20215

Last LPSN update 2026-02-09 11:20:43

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Caryophanaceae

Genus Paenisporosarcina

Species Paenisporosarcina antarctica

Full scientific name Paenisporosarcina antarctica (Yu et al. 2008) Reddy et al. 2013

Synonyms (1)

Sporosarcina antarctica

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32646	positive	1.1-2.6 µm	0.3-0.6 µm	rod-shaped

Pigmentation

32646

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16084	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16084	positive	growth	18
32646	positive	growth	0-23
32646	positive	optimum	17-18
67770	positive	growth	22

Culture pH

@ref	Ability	Type	PH	PH range
32646	positive	optimum	06-08
32646	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32646	facultative anaerobe
125439	obligate aerobe	95.4

Spore formation

32646

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32646	NaCl	positive	growth	0-9 %
32646	NaCl	positive	optimum	0-9 %

Observation

@ref	Observation
32646	aggregates in chains
67770	quinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32646	17234 ChEBI	glucose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32646	alkaline phosphatase	+	3.1.3.1
32646	catalase	+	1.11.1.6
32646	cytochrome oxidase	+	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	gluconeogenesis	100	8 of 8
66794	vitamin K metabolism	100	5 of 5
66794	lipoate biosynthesis	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	threonine metabolism	100	10 of 10
66794	aspartate and asparagine metabolism	100	9 of 9
66794	ppGpp biosynthesis	100	4 of 4
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	propionate fermentation	100	10 of 10
66794	ribulose monophosphate pathway	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	propanol degradation	100	7 of 7
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	alanine metabolism	93.1	27 of 29
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	vitamin B1 metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	leucine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	flavin biosynthesis	80	12 of 15
66794	Entner Doudoroff pathway	80	8 of 10
66794	4-hydroxyphenylacetate degradation	80	8 of 10
66794	photosynthesis	78.57	11 of 14
66794	lysine metabolism	78.57	33 of 42
66794	citric acid cycle	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	pyrimidine metabolism	77.78	35 of 45
66794	serine metabolism	77.78	7 of 9
66794	biotin biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	methionine metabolism	73.08	19 of 26
66794	proline metabolism	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	degradation of sugar acids	72	18 of 25
66794	heme metabolism	71.43	10 of 14
66794	oxidative phosphorylation	71.43	65 of 91
66794	glutathione metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	lipid metabolism	70.97	22 of 31
66794	glycolysis	70.59	12 of 17
66794	starch degradation	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	tryptophan metabolism	68.42	26 of 38
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	d-mannose degradation	66.67	6 of 9
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	purine metabolism	65.96	62 of 94
66794	non-pathway related	65.79	25 of 38
66794	histidine metabolism	65.52	19 of 29
66794	ketogluconate metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	urea cycle	61.54	8 of 13
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	factor 420 biosynthesis	60	3 of 5
66794	3-chlorocatechol degradation	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	myo-inositol biosynthesis	60	6 of 10
66794	glycogen metabolism	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	polyamine pathway	52.17	12 of 23
66794	kanosamine biosynthesis II	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	phenylmercury acetate degradation	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	quinate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	CMP-KDO biosynthesis	50	2 of 4
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	cholesterol biosynthesis	45.45	5 of 11
66794	lipid A biosynthesis	44.44	4 of 9
66794	degradation of pentoses	42.86	12 of 28
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	hydrogen production	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	glycine betaine biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	degradation of hexoses	38.89	7 of 18
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	sulfate reduction	38.46	5 of 13
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	vitamin B6 metabolism	36.36	4 of 11
66794	carotenoid biosynthesis	36.36	8 of 22
66794	tyrosine metabolism	35.71	5 of 14
66794	vitamin B12 metabolism	35.29	12 of 34
66794	methane metabolism	33.33	1 of 3
66794	allantoin degradation	33.33	3 of 9
66794	cyanate degradation	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	ascorbate metabolism	31.82	7 of 22
66794	ginsenoside metabolism	31.25	5 of 16
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	metabolism of disaccharids	27.27	3 of 11
66794	d-xylose degradation	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	toluene degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	cyclohexanol degradation	25	1 of 4
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	daunorubicin biosynthesis	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
16084	Soil samples	West Antarctica, King George Island (62° 13' 31" S 58° 57' 08" W)			Australia and Oceania	-62.2253	-58.9522 -62.2253/-58.9522
67770	Soil samples collected off King George Island	west Antarctica (62° 13' 31" S 58° 57' 08" W)	Antarctica	ATA	Antarctica	-62.2253	-58.9522 -62.2253/-58.9522

Taxonmaps

69479

Global distribution of 16S sequence EF154512 (>99% sequence identity) for Paenisporosarcina from Microbeatlas

Aquatic Samples	186
Soil Samples	516
Animal Samples	148
Plant Samples	31
Total Samples	881

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16084	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM436758v1 assembly for Paenisporosarcina antarctica CGMCC 1.6503	complete	GCA_004367585	417367.3	2852116859	417367	94.7

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16084	Sporosarcina antarctica strain N-05 16S ribosomal RNA gene, partial sequence	EF154512	1446		417367

GC content

@ref	GC-content (mol%)	Method
16084	39.2	thermal denaturation, midpoint method (Tm)
32646	39.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenisporosarcina antarctica strain CGMCC 1.6503
PATRIC: 417367.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	81.10	no
125439	motility	BacteriaNetⓘ	yes	70.40	no
125439	gram_stain	BacteriaNetⓘ	positive	69.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenisporosarcina antarctica CGMCC 1.6503
NCBI: GCA_004367585.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	80.13	yes
125438	anaerobic	anaerobicⓘ	no	95.82	no
125438	aerobic	aerobicⓘ	yes	66.01	yes
125438	spore-forming	spore-formingⓘ	yes	87.73	yes
125438	thermophilic	thermophileⓘ	no	93.34	yes
125438	flagellated	motile2+ⓘ	no	69.34	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Ancient Roman bacterium against current issues: strain Aquil_B6, Paenisporosarcina quisquiliarum, or Psychrobacillus psychrodurans?	Colautti A, Comi G, Peterlunger E, Iacumin L.	Microbiol Spectr	10.1128/spectrum.00686-23	2023
Phylogeny	Isolation and Characterization of the First Temperate Virus Infecting Psychrobacillus from Marine Sediments.	Liu W, Zheng X, Dai X, Zhang Z, Zhang W, Xiao T, Huang L.	Viruses	10.3390/v14010108	2022
Phylogeny	Paenisporosarcina indica sp. nov., a psychrophilic bacterium from a glacier, and reclassification of Sporosarcina antarctica Yu et al., 2008 as Paenisporosarcina antarctica comb. nov. and emended description of the genus Paenisporosarcina.	Reddy GSN, Manasa BP, Singh SK, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.047514-0	2013
Phylogeny	Sporosarcina antarctica sp. nov., a psychrophilic bacterium isolated from the Antarctic.	Yu Y, Xin YH, Liu HC, Chen B, Sheng J, Chi ZM, Zhou PJ, Zhang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.65838-0	2008

References

#16084	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21991
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28857	IJSEM 2114 2008 ( DOI 10.1099/ijs.0.65838-0 , PubMed 18768614 )
#32646	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28857
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenisporosarcina antarctica (DSM 21991, JCM 14646, CGMCC 1.6503)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004367585

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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