Name: Nocardioides aequoreus SST-45
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11086

Type strain:

Species: Nocardioides aequoreus

Strain Designation: SST-45

Culture col. no.: DSM 21547, CIP 109645, JCM 13812, NRRL B-24464

Strain history: CIP <- 2007, JCM <- S.D. Lee, Cheju Unvi., Jeju, Korea: strain SST-45

NCBI tax ID(s): 397278 (species)

SI-ID 309460

JCM 13812, NRRL B-24464, CIP 109645, DSM 21547

Section

Nocardioides aequoreus SST-45 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from sandy sediment.

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides aequoreus**
	Full Scientific Name (LPSN)	Nocardioides aequoreus (Lee 2007) Wang et al. 2023

Synonym

Marmoricola aequoreus

Information on morphological and physiological properties Morphology

[Ref.: #31947]	Gram stain	positive
[Ref.: #116056]	Gram stain	positive

[Ref.: #31947]	Cell length	0.6 µm

[Ref.: #31947]	Cell shape	coccus-shaped
[Ref.: #116056]	Cell shape	coccus-shaped

[Ref.: #31947]	Motility	no
[Ref.: #116056]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15786]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15786]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #15786]

Culture medium composition

expand / minimize

[Ref.: #15786]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #15786]

Culture medium growth

[Ref.: #15786]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #37803]

Culture medium

MEDIUM 112 - for Janibacter

[Ref.: #37803]

Culture medium growth

[Ref.: #37803]

Culture medium composition

expand / minimize

[Ref.: #116056]

Culture medium

CIP Medium 112

[Ref.: #116056]

Culture medium growth

[Ref.: #116056]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15786]	growth	28 °C
[Ref.: #31947]	growth	10-37 °C
[Ref.: #31947]	optimum	23.5 °C
[Ref.: #37803]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #15786]	Temperature range	mesophilic
[Ref.: #31947]	Temperature range	psychrophilic
[Ref.: #37803]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31947]			optimum	7.1
[Ref.: #31947]			growth	5.1-12.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31947]

Oxygen tolerance

aerobe

[Ref.: #31947]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31947]		NaCl		growth	0.0-7.0	%
[Ref.: #31947]		NaCl		optimum	5	%

[Ref.: #31947]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31947]	acetate ChEBI	+	carbon source
[Ref.: #31947]	cellobiose ChEBI	+	carbon source
[Ref.: #31947]	citrate ChEBI	+	carbon source
[Ref.: #31947]	esculin ChEBI	+	hydrolysis
[Ref.: #31947]	fructose ChEBI	+	carbon source
[Ref.: #31947]	galactose ChEBI	+	carbon source
[Ref.: #31947]	glucose ChEBI	+	carbon source
[Ref.: #31947]	glycerol ChEBI	+	carbon source
[Ref.: #31947]	lactose ChEBI	+	carbon source
[Ref.: #31947]	malate ChEBI	+	carbon source
[Ref.: #31947]	maltose ChEBI	+	carbon source
[Ref.: #31947]	mannitol ChEBI	+	carbon source
[Ref.: #31947]	mannose ChEBI	+	carbon source
[Ref.: #31947]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #31947]	nitrate ChEBI	+	reduction
[Ref.: #116056]	nitrate ChEBI	+	reduction
[Ref.: #116056]	nitrite ChEBI	-	reduction
[Ref.: #31947]	ribose ChEBI	+	carbon source
[Ref.: #31947]	salicin ChEBI	+	carbon source
[Ref.: #31947]	sorbitol ChEBI	+	carbon source
[Ref.: #31947]	succinate ChEBI	+	carbon source
[Ref.: #31947]	sucrose ChEBI	+	carbon source
[Ref.: #31947]	trehalose ChEBI	+	carbon source
[Ref.: #31947]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #31947]		hydrogen sulfide ChEBI	yes
[Ref.: #116056]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #31947]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116056]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #31947]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #116056]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116056]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116056]	12026	-	+	+	+	-	+	-	-	-	-	-	-	-	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15786]	Sample type/isolated from	sandy sediment
[Ref.: #15786]	Geographic location (country and/or sea, region)	Jeju Island, Samyang beach
[Ref.: #15786]	Country	Republic of Korea
[Ref.: #15786]	Country ISO 3 Code	KOR
[Ref.: #15786]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sandy sediment of Samyang Beach
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #116056]	Sample type/isolated from	Environment, Sandy sediment
[Ref.: #116056]	Geographic location (country and/or sea, region)	Samyang beach, Jeju Island
[Ref.: #116056]	Country	Republic of Korea
[Ref.: #116056]	Country ISO 3 Code	KOR
[Ref.: #116056]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM295338 (>99% sequence identity) for Marmoricola aequoreus from Microbeatlas

Aquatic Samples	53
Soil Samples	193
Animal Samples	393
Plant Samples	64
Total Samples	703

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15786]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116056]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15786]	Marmoricola aequoreus partial 16S rRNA gene, type strain SST-45T	AM295338	1398	ENA	397278 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Marmoricola aequoreus NRRL B-24464	GCA_000720335	contig	GenBank	397278 tax ID

[Ref.: #15786]	GC-content	72.4 mol%
[Ref.: #67770]	GC-content	72.4 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marmoricola aequoreus NRRL B-24464 NCBI: GCA_000720335.1
[Ref.: #69480]	motile	no	62.851	yes
[Ref.: #69480]	flagellated	no	91.834	yes
[Ref.: #69480]	gram-positive	yes	89.228	yes
[Ref.: #69480]	anaerobic	no	98.925	no
[Ref.: #69480]	halophile	no	93.572	no
[Ref.: #69480]	spore-forming	no	89.984	no
[Ref.: #69480]	glucose-util	yes	89.13	yes
[Ref.: #69480]	aerobic	yes	93.17	no
[Ref.: #69480]	thermophile	no	97.834	yes
[Ref.: #69480]	glucose-ferment	no	88.614	no

Availability in culture collections External links

[Ref.: #15786]

Culture collection no.

DSM 21547, CIP 109645, JCM 13812, NRRL B-24464

[Ref.: #80335]

SI-ID 309460

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marmoricola aquaticus sp. nov., an actinomycete isolated from a marine sponge.	de Menezes CBA, Tonin MF, Silva LJ, de Souza WR, Parma M, de Melo IS, Zucchi TD, Destefano SAL, Fantinatti-Garboggini F	Int J Syst Evol Microbiol	10.1099/ijs.0.000254	2015	*
Phylogeny	Marmoricola solisilvae sp. nov. and Marmoricola terrae sp. nov., isolated from soil and emended description of the genus Marmoricola.	Kim SJ, Lim JM, Hamada M, Ahn JH, Weon HY, Suzuki KI, Ahn TY, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.000184	2015	*
Phylogeny	Marmoricola korecus sp. nov.	Lee SD, Lee DW, Ko YH	Int J Syst Evol Microbiol	10.1099/ijs.0.025460-0	2010	*
Phylogeny	Marmoricola bigeumensis sp. nov., a member of the family Nocardioidaceae.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65576-0	2008	*
Phylogeny	Marmoricola aequoreus sp. nov., a novel actinobacterium isolated from marine sediment.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.64696-0	2007	*

References

#15786

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21547

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31947

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28203 (see below)

#37803 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80335

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309460.1 )

#116056 Collection of Institut Pasteur ; Curators of the CIP; CIP 109645

#28203

IJSEM 1391 2007 ( DOI 10.1099/ijs.0.64696-0 , PubMed 17625163 )

* These data were automatically processed and therefore are not curated

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Marmoricola aequoreus NRRL B-24464

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