Name: Clostridium polynesiense MS1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131494

Type strain:

Species: Clostridium polynesiense

Strain Designation: MS1

Culture col. no.: DSM 27072, CSUR P630

Strain history: <- S. Metidji, Timone Hospital, Marseille, France; MS1 <- S. Metidji {2012}

NCBI tax ID(s): 1325933 (species)

SI-ID 404568

DSM 27072

Section

Clostridium polynesiense MS1 is an anaerobe, mesophilic bacterium that was isolated from human feces from a healthy male.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium polynesiense**
	Full Scientific Name (LPSN)	Clostridium polynesiense Sankar et al. 2023

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22721]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #22721]

Culture medium growth

[Ref.: #22721]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22721]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22721]			growth	37 °C

[Ref.: #22721]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22721]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22721]	Sample type/isolated from	human feces from a healthy male
[Ref.: #22721]	Geographic location (country and/or sea, region)	French Polynesia
[Ref.: #22721]	Country	France
[Ref.: #22721]	Country ISO 3 Code	FRA
[Ref.: #22721]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	#Male
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HF952918 (>99% sequence identity) for Clostridium polynesiense subclade from Microbeatlas

Aquatic Samples	17
Soil Samples	90
Animal Samples	234
Plant Samples	1
Total Samples	342

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22721]	Clostridium polynesiense partial 16S rRNA gene, type strain MS1T	HF952918	1477	ENA	1325933 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium polynesiense MS1	GCA_000820705	contig	GenBank	1325933 tax ID	*
[Ref.: #66792]	Clostridium polynesiense MS1	2654587701	draft	JGI IMG/M	1325933 tax ID	*

[Ref.: #22721]

GC-content

34 mol%

Availability in culture collections External links

[Ref.: #22721]

Culture collection no.

DSM 27072, CSUR P630

[Ref.: #89911]

SI-ID 404568

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Clostridium polynesiense sp. nov., a new member of the human gut microbiota in French Polynesia.	Sankar SA, Rathored J, Metidji S, Lagier JC, Khelaifia S, Labas N, Musso D, Raoult D, Fournier PE	Anaerobe	10.1016/j.anaerobe.2015.10.004	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22721

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27072

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89911

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404568.1 )

* These data were automatically processed and therefore are not curated

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