Agromyces ramosus (DSM 43045, ATCC 25173, KCC A-0108)

Name: Agromyces ramosus (DSM 43045, ATCC 25173, KCC A-0108)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7260

Type strain

Strain Designation PSU 38L

Culture col. no. DSM 43045 ATCC 25173 KCC A-0108 PSU 38L VKM Ac-1198 15 more

NCBI tax ID(s) 33879

Special Collections DSMZ JCM KCTC CIP Wink compendium JMRC

History DSMZ <- KCC <- L.E. Casida Jr., PSU 38L JCM <-- KCC A-0108 <-- L. E. Casida PSU 38L.

Links

Agromyces ramosus PSU 38L is a microaerophile bacterium that was isolated from Soil.

microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 8891

LMG 16680,ATCC 25173,CCRC 12879,CIP 103037,DSM 43045,IFO 13895,IFO 13899,IMET 11027,JCM 3108,NCIMB 10801,VKM Ac-1198,MTCC 267,KCTC 9232,NBRC 13895,NBRC 13899,BCRC 12879,IAM 15120

@ref 20215

Last LPSN update 2026-05-29 08:26:36

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Agromyces

Species Agromyces ramosus

Full scientific name Agromyces ramosus Gledhill and Casida 1969 (Approved Lists 1980)

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	91.5
125438	91.714	positive
125439	96.278	positive

Colony morphology

@ref	Colony color	Incubation period	Medium used
19933	Colorless	10-14 days	ISP 4
19933	Colorless	10-14 days	ISP 5
19933	Colorless	10-14 days	ISP 6
19933	Colorless	10-14 days	ISP 7

Multicellular morphology

@ref	Forms multicellular complex	Medium name
19933		ISP 2
19933		ISP 3
19933		ISP 4
19933		ISP 5
19933		ISP 6
19933		ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
19933	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19933	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19933	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19933	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
10715	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10715	positive	growth	28
19933	positive	optimum	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
10715	microaerophile
10715	aerobe
125438	aerobe	93.693
125439	obligate aerobe	99.661

Spore formation

@ref	Spore formation	Confidence
125439		90.025

Halophily

@ref	Salt	Growth	Tested relation	Concentration
19933	NaCl	positive	growth	0 %

Observation

67770

Observationquinones: MK-12, MK-13

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
19933	22599 ChEBI	arabinose	-
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
19933	62968 ChEBI	cellulose	+
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
19933	28757 ChEBI	fructose	-
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
19933	17234 ChEBI	glucose	+
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
19933	29864 ChEBI	mannitol	-
19933	17268 ChEBI	myo-inositol	+
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
19933	16634 ChEBI	raffinose	-
19933	26546 ChEBI	rhamnose	+
19933	17992 ChEBI	sucrose	-
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
19933	18222 ChEBI	xylose	+

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68368	gelatinase	-		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68379	urease	-	3.5.1.5	from API Coryne
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	cardiolipin biosynthesis	100	7 of 7
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	palmitate biosynthesis	100	22 of 22
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	vitamin K metabolism	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	glycogen metabolism	100	5 of 5
66794	heme metabolism	92.86	13 of 14
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	chorismate metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	dTDPLrhamnose biosynthesis	87.5	7 of 8
66794	degradation of sugar alcohols	87.5	14 of 16
66794	flavin biosynthesis	86.67	13 of 15
66794	NAD metabolism	83.33	15 of 18
66794	purine metabolism	82.98	78 of 94
66794	metabolism of disaccharids	81.82	9 of 11
66794	pyrimidine metabolism	80	36 of 45
66794	peptidoglycan biosynthesis	80	12 of 15
66794	factor 420 biosynthesis	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	gallate degradation	80	4 of 5
66794	starch degradation	80	8 of 10
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	photosynthesis	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	4-hydroxymandelate degradation	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	tryptophan metabolism	76.32	29 of 38
66794	alanine metabolism	75.86	22 of 29
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	histidine metabolism	72.41	21 of 29
66794	citric acid cycle	71.43	10 of 14
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	arginine metabolism	70.83	17 of 24
66794	propionate fermentation	70	7 of 10
66794	leucine metabolism	69.23	9 of 13
66794	lipid metabolism	67.74	21 of 31
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	allantoin degradation	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	glutathione metabolism	64.29	9 of 14
66794	degradation of pentoses	64.29	18 of 28
66794	proline metabolism	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	urea cycle	61.54	8 of 13
66794	methionine metabolism	61.54	16 of 26
66794	polyamine pathway	60.87	14 of 23
66794	Entner Doudoroff pathway	60	6 of 10
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	3-chlorocatechol degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	tyrosine metabolism	57.14	8 of 14
66794	cysteine metabolism	55.56	10 of 18
66794	degradation of hexoses	55.56	10 of 18
66794	phenol degradation	55	11 of 20
66794	oxidative phosphorylation	54.95	50 of 91
66794	lysine metabolism	54.76	23 of 42
66794	degradation of sugar acids	52	13 of 25
66794	myo-inositol biosynthesis	50	5 of 10
66794	kanosamine biosynthesis II	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	lactate fermentation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	cyclohexanol degradation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	biotin biosynthesis	50	2 of 4
66794	quinate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	nitrate assimilation	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	propanol degradation	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	arachidonate biosynthesis	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	O-antigen biosynthesis	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	carotenoid biosynthesis	36.36	8 of 22
66794	IAA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	ascorbate metabolism	31.82	7 of 22
66794	sulfate reduction	30.77	4 of 13
66794	vitamin B1 metabolism	30.77	4 of 13
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	vitamin B6 metabolism	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	toluene degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
19933	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
19933	-	-	-	-	-	-	+	-	+	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19933	not determinedn.d.	-	+	+	-	+	+	+	-	-	-	-	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation

67770

Sample typeSoil

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19933	1	German classification According to TRBA 466
10715	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM421666v1 assembly for Agromyces ramosus DSM 43045	scaffold	GCA_004216665	33879.4	2799112209	33879	68.62

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
10715	A.ramosum (DSM 43045) 16S rRNA gene	X77447	1482		33879

GC content

@ref	GC-content (mol%)	Method
67770	71.4	Buoyant density centrifugation (BD)
67770	68.9	high performance liquid chromatography (HPLC)
67770	76.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM421666v1 assembly for Agromyces ramosus DSM 43045
NCBI: GCA_004216665

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.66	no
125439	gram_stain	BacteriaNetⓘ	positive	96.28	no
125439	motility	BacteriaNetⓘ	no	72.43	no
125439	spore_formation	BacteriaNetⓘ	no	90.03	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Agromyces ramosus strain DSM 43045
PATRIC: 33879.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.71	no
125438	anaerobic	anaerobicⓘ	no	97.44	no
125438	spore-forming	spore-formingⓘ	no	75.63	no
125438	aerobic	aerobicⓘ	yes	93.69	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	no	91.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Detection of antibiotics synthetized in microfluidic picolitre-droplets by various actinobacteria.	Mahler L, Wink K, Beulig RJ, Scherlach K, Tovar M, Zang E, Martin K, Hertweck C, Belder D, Roth M.	Sci Rep	10.1038/s41598-018-31263-2	2018
	Interaction of Agromyces ramosus with Other Bacteria in Soil.	Casida LE.	Appl Environ Microbiol	10.1128/aem.46.4.881-888.1983	1983
	Relation to copper of N-1, a nonobligate bacterial predator.	Casida LE.	Appl Environ Microbiol	10.1128/aem.53.7.1515-1518.1987	1987
	Response in Soil of Cupriavidus necator and Other Copper-Resistant Bacterial Predators of Bacteria to Addition of Water, Soluble Nutrients, Various Bacterial Species, or Bacillus thuringiensis Spores and Crystals.	Casida LE.	Appl Environ Microbiol	10.1128/aem.54.9.2161-2166.1988	1988
Pathogenicity	Effects of magnesium, calcium, and serum on reversion of stable L-forms.	Horwitz AH, Casida LE.	J Bacteriol	10.1128/jb.136.2.565-569.1978	1978
	Distribution of thiols in microorganisms: mycothiol is a major thiol in most actinomycetes.	Newton GL, Arnold K, Price MS, Sherrill C, Delcardayre SB, Aharonowitz Y, Cohen G, Davies J, Fahey RC, Davis C.	J Bacteriol	10.1128/jb.178.7.1990-1995.1996	1996
	Predominant Catalase-negative Soil Bacteria. III. Agromyces, gen. n., Microorganisms Intermediary to Actinomyces and Nocardia.	Gledhill WE, Casida LE.	Appl Microbiol	10.1128/am.18.3.340-349.1969	1969
	Agar-like polysaccharide produced by a pseudomonas species: production and basic properties.	Kang KS, Veeder GT, Mirrasoul PJ, Kaneko T, Cottrell IW.	Appl Environ Microbiol	10.1128/aem.43.5.1086-1091.1982	1982
	Competitive ability and survival in soil of pseudomonas strain 679-2, a dominant, nonobligate bacterial predator of bacteria.	Casida LE.	Appl Environ Microbiol	10.1128/aem.58.1.32-37.1992	1992
	Microflora of soil as viewed by transmission electron microscopy.	Bae HC, Cota-Robles EH, Casida LE.	Appl Microbiol	10.1128/am.23.3.637-648.1972	1972
Metabolism	Biosynthesis and functions of mycothiol, the unique protective thiol of Actinobacteria.	Newton GL, Buchmeier N, Fahey RC.	Microbiol Mol Biol Rev	10.1128/mmbr.00008-08	2008
	Linking Soil Microbial Functional Profiles to Fungal Disease Resistance in Winter Barley Under Different Fertilisation Regimes.	Petkova M, Chavdarov P, Shilev S.	Plants (Basel)	10.3390/plants14203199	2025
Metabolism	Soil microorganism colonization influenced the growth and secondary metabolite accumulation of Bletilla striata (Thunb.) Rchb. F.	Xu Q, Fu Y, Zhang J, Xu C, Yang C, Yuan Q, Xu J, Jiang W, Zhang Y, Zhou T, Xiao C.	BMC Microbiol	10.1186/s12866-025-03960-2	2025
Phylogeny	Culture-Dependent and Metabarcoding Characterization of the Sugar Beet (Beta vulgaris L.) Microbiome for High-Yield Isolation of Bacteria with Plant Growth-Promoting Traits.	Krstic Tomic T, Atanaskovic I, Nikolic I, Jokovic N, Stevic T, Stankovic S, Beric T, Lozo J.	Microorganisms	10.3390/microorganisms11061538	2023
	The structure and diversity of microbial communities in Paederus fuscipes (Coleoptera: Staphylinidae): from ecological paradigm to pathobiome.	Chamankar B, Maleki-Ravasan N, Karami M, Forouzan E, Karimian F, Naeimi S, Choobdar N.	Microbiome	10.1186/s40168-022-01456-z	2023
	Precipitin response of potato processing workers to work-related microbial allergens.	Dutkiewicz J, Skorska C, Krysinska-Traczyk E, Cholewa G, Sitkowska J, Milanowski J, Gora A.	Ann Agric Environ Med		2002
	Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil.	Pepe-Ranney C, Campbell AN, Koechli CN, Berthrong S, Buckley DH.	Front Microbiol	10.3389/fmicb.2016.00703	2016
	Copper and Melanin Play a Role in Myxococcus xanthus Predation on Sinorhizobium meliloti.	Contreras-Moreno FJ, Munoz-Dorado J, Garcia-Tomsig NI, Martinez-Navajas G, Perez J, Moraleda-Munoz A.	Front Microbiol	10.3389/fmicb.2020.00094	2020
Genetics	Antibiotics from predatory bacteria.	Korp J, Vela Gurovic MS, Nett M.	Beilstein J Org Chem	10.3762/bjoc.12.58	2016
	Small cells in pure cultures of Agromyces ramosus and in natural soil.	Casida LE.	Can J Microbiol	10.1139/m77-032	1977
Pathogenicity	L-Phase variants of Agromyces ramosus.	Horwitz AH, Casida LE.	Antonie Van Leeuwenhoek	10.1007/bf02565047	1975
	BALOs Improved Gut Microbiota Health in Postlarval Shrimp (Litopenaeus vannamei) After Being Subjected to Salinity Reduction Treatment.	Cao Q, Najnine F, Han H, Wu B, Cai J.	Front Microbiol	10.3389/fmicb.2020.01296	2020
	Survival and reversion of a stable L form in soil.	Horwitz AH, Casida LE.	Can J Microbiol	10.1139/m78-009	1978
	Prevalence and Correlates of Phenazine Resistance in Culturable Bacteria from a Dryland Wheat Field.	Perry EK, Newman DK.	Appl Environ Microbiol	10.1128/aem.02320-21	2022
Phylogeny	Distribution and phylogenetic analysis of family 19 chitinases in Actinobacteria.	Kawase T, Saito A, Sato T, Kanai R, Fujii T, Nikaidou N, Miyashita K, Watanabe T.	Appl Environ Microbiol	10.1128/aem.70.2.1135-1144.2004	2004
Phylogeny	Rare bacterium of new genus isolated with prolonged enrichment culture.	Hashizume A, Fudou R, Jojima Y, Nakai R, Hiraishi A, Tabuchi A, Sen K, Shibai H	Biosci Biotechnol Biochem	10.1271/bbb.68.28	2004
Phylogeny	Agromyces silvae sp. nov., Rathayibacter soli sp. nov., and Nocardioides terrisoli sp. nov., Isolated from Soil.	Lee H, Chaudhary DK, Kim DU.	J Microbiol Biotechnol	10.4014/jmb.2404.04007	2024
Phylogeny	Agromyces bauzanensis sp. nov., isolated from soil.	Zhang DC, Schumann P, Liu HC, Xin YH, Zhou YG, Schinner F, Margesin R.	Int J Syst Evol Microbiol	10.1099/ijs.0.017186-0	2010
Phylogeny	Humibacter albus gen. nov., sp. nov., isolated from sewage sludge compost.	Vaz-Moreira I, Nobre MF, Ferreira AC, Schumann P, Nunes OC, Manaia CM.	Int J Syst Evol Microbiol	10.1099/ijs.0.65266-0	2008
Enzymology	Agromyces albus sp. nov., isolated from a plant (Androsace sp.).	Dorofeeva LV, Krausova VI, Evtushenko LI, Tiedje JM.	Int J Syst Evol Microbiol	10.1099/ijs.0.02428-0	2003
Phylogeny	Agromyces tardus sp. nov., an actinobacterium isolated from the rhizosphere soil of wheat (Triticum aestivum L.).	Sun T, Cao P, Sun K, Li C, Jiang M, Jia W, Wang X, Zhao J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003621	2019
Phylogeny	Agromyces insulae sp. nov., an actinobacterium isolated from a soil sample.	Huang JR, Ming H, Li S, Meng XL, Zhang JX, Khieu TN, Tang Z, Li WJ, Nie GX	Int J Syst Evol Microbiol	10.1099/ijsem.0.000978	2016

References

#10715	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43045
#19933	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Agromyces ramosus (DSM 43045, ATCC 25173, KCC A-0108)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API 20E

API coryne

API zym

Isolation, sampling and environmental information

Isolation

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Sequence information

Genome sequences

Genome browser: GCA_004216665

16S sequences

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