Clostridium paraputrificum (DSM 2630, ATCC 25780, NCIB 10671)

Name: Clostridium paraputrificum (DSM 2630, ATCC 25780, NCIB 10671)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2624

Type strain

Culture col. no. DSM 2630 ATCC 25780 NCIB 10671 CCUG 32755 NCTC 11833 4 more

NCBI tax ID(s) 29363

Special Collections DSMZ CCUG JCM

History DSMZ <- ATCC <- L.DS. Smith, VPI 1584 JCM <-- ATCC 25780 <-- L. DS. Smith VPI 1584.

Links

Clostridium paraputrificum DSM 2630 is an anaerobe bacterium of the family Clostridiaceae.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 265463

ATCC 25780,CCUG 32755,DSM 2630,NCTC 11833,NCIB 10671,JCM 1293,CCRC 14550,NCIMB 10671,BCRC 14550,VTT E-042447

@ref 20215

Last LPSN update 2026-05-29 08:25:31

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium paraputrificum

Full scientific name Clostridium paraputrificum (Bienstock 1906) Snyder 1936 (Approved Lists 1980)

Synonyms (1)

"Bacillus paraputrificus"

BacDive ID	Other strains from **Clostridium paraputrificum** (16)	Type strain
2623	C. paraputrificum Schubert, strain Schubert (Jena), DSM 661
2625	C. paraputrificum DSM 46280, IMET 10865, SG 1339
131687	C. paraputrificum J4, DSM 103826
145054	C. paraputrificum CCUG 27528
145423	C. paraputrificum CCUG 28442
145729	C. paraputrificum CCUG 29418
146671	C. paraputrificum CCUG 31763
150022	C. paraputrificum CCUG 38856 A
150637	C. paraputrificum CCUG 41839
152166	C. paraputrificum CCUG 45954
156920	C. paraputrificum CCUG 67066
158914	C. paraputrificum H4_20, DSM 108201
160009	C. paraputrificum Cla-CZ-230, DSM 109054
163982	C. paraputrificum JCM 31254
165124	C. paraputrificum JCM 5236, VPI 1586
165125	C. paraputrificum JCM 5237, VPI 6372

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1176	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
1176	CHOPPED MEAT MEDIUM (DSMZ Medium 78)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
1176	positive	growth	37
51161	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
1176	anaerobe
51161	anaerobe
125439	facultative anaerobe	99.405

Spore formation

@ref	Spore formation	Confidence
125439		90.965

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	starch degradation	100	10 of 10
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	vitamin B1 metabolism	92.31	12 of 13
66794	palmitate biosynthesis	90.91	20 of 22
66794	chorismate metabolism	88.89	8 of 9
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	hydrogen production	80	4 of 5
66794	pyrimidine metabolism	80	36 of 45
66794	cellulose degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	threonine metabolism	80	8 of 10
66794	purine metabolism	79.79	75 of 94
66794	serine metabolism	77.78	7 of 9
66794	valine metabolism	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	NAD metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	photosynthesis	71.43	10 of 14
66794	non-pathway related	71.05	27 of 38
66794	phenylalanine metabolism	69.23	9 of 13
66794	alanine metabolism	68.97	20 of 29
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	degradation of hexoses	66.67	12 of 18
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	nitrate assimilation	66.67	6 of 9
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	methionine metabolism	65.38	17 of 26
66794	glutathione metabolism	64.29	9 of 14
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	heme metabolism	64.29	9 of 14
66794	pentose phosphate pathway	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	isoleucine metabolism	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	leucine metabolism	61.54	8 of 13
66794	glutamate and glutamine metabolism	60.71	17 of 28
66794	oxidative phosphorylation	60.44	55 of 91
66794	methylglyoxal degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	factor 420 biosynthesis	60	3 of 5
66794	propanol degradation	57.14	4 of 7
66794	cysteine metabolism	55.56	10 of 18
66794	tryptophan metabolism	55.26	21 of 38
66794	lipid metabolism	54.84	17 of 31
66794	metabolism of disaccharids	54.55	6 of 11
66794	urea cycle	53.85	7 of 13
66794	toluene degradation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	CMP-KDO biosynthesis	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	selenocysteine biosynthesis	50	3 of 6
66794	butanoate fermentation	50	2 of 4
66794	citric acid cycle	50	7 of 14
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	ketogluconate metabolism	50	4 of 8
66794	phenylmercury acetate degradation	50	1 of 2
66794	proline metabolism	45.45	5 of 11
66794	lysine metabolism	45.24	19 of 42
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	propionate fermentation	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	flavin biosynthesis	40	6 of 15
66794	coenzyme M biosynthesis	40	4 of 10
66794	degradation of pentoses	39.29	11 of 28
66794	arachidonic acid metabolism	38.89	7 of 18
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	sulfate reduction	38.46	5 of 13
66794	vitamin B12 metabolism	38.24	13 of 34
66794	tyrosine metabolism	35.71	5 of 14
66794	enterobactin biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	sphingosine metabolism	33.33	2 of 6
66794	pantothenate biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	polyamine pathway	30.43	7 of 23
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	ascorbate metabolism	27.27	6 of 22
66794	vitamin B6 metabolism	27.27	3 of 11
66794	degradation of sugar alcohols	25	4 of 16
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	carnitine metabolism	25	2 of 8
66794	androgen and estrogen metabolism	25	4 of 16
66794	degradation of sugar acids	24	6 of 25
66794	allantoin degradation	22.22	2 of 9

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence AB536771 (>99% sequence identity) for Clostridium paraputrificum subclade from Microbeatlas

Aquatic Samples	4616
Soil Samples	2219
Animal Samples	54761
Plant Samples	345
Total Samples	61941

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1176	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	52087_F01 assembly for Clostridium paraputrificum NCTC11833	contig	GCA_900447045	29363.20	2814123173	29363	75.45

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Clostridium paraputrificum strain DSM 2630 16S ribosomal RNA gene, partial sequence	HM245948	836	29363
20218	Clostridium paraputrificum 16S rRNA gene, strain DSM 2630	X73445	1511	29363
20218	Clostridium paraputrificum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1293	AB536771	1476	29363
1176	C.paraputrificum 16S rRNA gene	X75907	1467	29363

GC content

@ref	GC-content (mol%)	Method
1176	27.0
67770	27	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: 52087_F01 assembly for Clostridium paraputrificum NCTC11833
NCBI: GCA_900447045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	99.41	no
125439	gram_stain	BacteriaNetⓘ	positive	73.38	no
125439	motility	BacteriaNetⓘ	yes	82.34	no
125439	spore_formation	BacteriaNetⓘ	yes	90.97	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium paraputrificum strain NCTC11833
PATRIC: 29363.20

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	65.64	no
125438	anaerobic	anaerobicⓘ	yes	85.82	yes
125438	spore-forming	spore-formingⓘ	yes	74.39	no
125438	aerobic	aerobicⓘ	no	97.89	no
125438	thermophilic	thermophileⓘ	no	90.66	yes
125438	flagellated	motile2+ⓘ	yes	76.49	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	The botanical origin and antioxidant, anti-BACE1 and antiproliferative properties of bee pollen from different regions of South Korea.	Zou Y, Hu J, Huang W, Zhu L, Shao M, Dordoe C, Ahn YJ, Wang D, Zhao Y, Xiong Y, Wang X.	BMC Complement Med Ther	10.1186/s12906-020-03023-1	2020
Enzymology	Microbial Hydroxysteroid Dehydrogenases: From Alpha to Omega.	Doden HL, Ridlon JM.	Microorganisms	10.3390/microorganisms9030469	2021
Pathogenicity	A Thermophilic Phage Endolysin Fusion to a Clostridium perfringens-Specific Cell Wall Binding Domain Creates an Anti-Clostridium Antimicrobial with Improved Thermostability.	Swift SM, Seal BS, Garrish JK, Oakley BB, Hiett K, Yeh HY, Woolsey R, Schegg KM, Line JE, Donovan DM.	Viruses	10.3390/v7062758	2015
	Relationship between total phenolic contents and biological properties of propolis from 20 different regions in South Korea.	Wang X, Sankarapandian K, Cheng Y, Woo SO, Kwon HW, Perumalsamy H, Ahn YJ.	BMC Complement Altern Med	10.1186/s12906-016-1043-y	2016
Metabolism	An in vitro model of the horse gut microbiome enables identification of lactate-utilizing bacteria that differentially respond to starch induction.	Biddle AS, Black SJ, Blanchard JL.	PLoS One	10.1371/journal.pone.0077599	2013
Pathogenicity	In vitro antianaerobic activity of DX-619, a new des-fluoro(6) quinolone.	Tanaka K, Mikamo H, Nakao K, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.00639-06	2006
Biotechnology	Detection of enterotoxigenic Clostridium perfringens in food and fecal samples with a duplex PCR and the slide latex agglutination test.	Fach P, Popoff MR.	Appl Environ Microbiol	10.1128/aem.63.11.4232-4236.1997	1997
Biotechnology	Evaluating food safety of traditionally fermented kocho: microbial profiling through classical methods and PacBio SMRT sequencing technology.	Andeta AF, Lema NK, Debel GL, Misganaw FW, Ifa AC.	Antonie Van Leeuwenhoek	10.1007/s10482-025-02134-4	2025
	Gut microbiota dysbiosis in a novel mouse model of colitis potentially increases the risk of colorectal cancer.	Pramana AAC, Xu GB, Liang S, Garcia Vazquez EO, Allen JM, Loman BR, Mei W, Pan YX, Chen H.	Am J Physiol Gastrointest Liver Physiol	10.1152/ajpgi.00040.2025	2025
	Diagnosis and treatment challenges in a rare Clostridium infection: A case report.	Balas-Maftei B, Florea CE, Obreja M, Rotaru A, Miftode L, Miftode E, Irimie-Baluta ER, Manciuc C.	Biomed Rep	10.3892/br.2024.1837	2024
	Clostridium paraputrificum Bacteremia and Ectopic Ileal Varices in Underlying Chronic Portal and Superior Mesenteric Vein Thrombosis: Report of a Rare Case.	Smanis G, Avgoustou E, Papadopoulos I, Papadopoulos A, Athanasakos A, Athanasiadis E, Vassilara F.	Case Rep Infect Dis	10.1155/2024/9443664	2024
	Clostridium paraputrificum in a Middle-Aged Male With Liver Disease.	Dao KT, D'Assumpcao C, Sharma R, Heidari A.	J Investig Med High Impact Case Rep	10.1177/23247096241292213	2024
Phylogeny	Clostridium paraputrificum bacteremia in a 64-year-old woman with colon carcinoma.	Rodriguez RT, Solis Marquinez MN, Alvarez MDCC, Fernandez Suarez J, Fernandez Dominguez J, Rodriguez BI, Rodriguez Alvarez FJ.	Anaerobe	10.1016/j.anaerobe.2023.102716	2023
	Clostridium paraputrificum Bacteremia in a Patient with Rectal Cancer after Receiving Antibiotic Therapy for Acute Pharyngolaryngitis.	Maeda Y, Miura R, Echizenya T, Hoshi K, Kubo N, Nakai H, Matsumoto K, Ikejima S, Kudo N, Matsubara A.	Intern Med	10.2169/internalmedicine.2192-23	2024
	Clostridium paraputrificum Bacteremia in a Patient with Human Immunodeficiency Virus Infection: A Case Report and Literature Review.	Hosin N, Abu-Ali BM, Al Rashed AS, Al-Warthan SM, Diab AE.	Infect Drug Resist	10.2147/idr.s400490	2023
Enzymology	Identification of gut bacteria reductases that biotransform steroid hormones.	Arp G, Jiang AK, Dufault-Thompson K, Levy S, Zhong A, Wassan JT, Grant MR, Li Y, Hall B, Jiang X.	Nat Commun	10.1038/s41467-025-61425-6	2025
Phylogeny	Investigating the gut bacteria structure and function of hibernating bats through 16S rRNA high-throughput sequencing and culturomics.	Zhou J, Liu Y, Gu T, Zhou J, Chen F, Li S.	mSystems	10.1128/msystems.01463-24	2025
	Splenic infarction secondary to COVID-19 complicated by Clostridium Paraputrificum infection.	Imam M, Hammond GW.	IDCases	10.1016/j.idcr.2021.e01357	2022
	A rare case of Clostridium paraputrificum bacteremia in a 78-year-old Caucasian man diagnosed with an intestinal neoplasm.	Intra J, Milano A, Sarto C, Brambilla P.	Anaerobe	10.1016/j.anaerobe.2020.102292	2020
	Presumptive complicating Clostridium paraputrificum bacteremia as a presenting manifestation in a patient with undiagnosed ulcerative colitis followed by acute colonic pseudo-obstruction.	Kaneko M, Moriyama C, Masuda Y, Sawachika H, Shikata H, Matsukage S.	IDCases	10.1016/j.idcr.2022.e01652	2023
	Clostridium paraputrificum bacteremia in a patient with presumptive complicated appendicitis: A case report.	Mostel Z, Hernandez A, Tatem L.	IDCases	10.1016/j.idcr.2021.e01361	2022
	Assessing Freshwater Microbiomes from Different Storage Sources in the Caribbean Using DNA Metabarcoding.	Cross J, Honnavar P, Quidet XLT, Butler T, Shivaprasad A, Christian L.	Microorganisms	10.3390/microorganisms11122945	2023
	Clostridium paraputrificum: An atypical and rare case of septic arthritis mimicking an acute sickle cell crisis.	Ciuro J, Little T, Hiner E, Vakhariya C.	IDCases	10.1016/j.idcr.2020.e01031	2021
	Clostridium paraputrificum septic arthritis and osteomyelitis of shoulder: A case report and review of literature.	Vijayvargiya P, Garrigos ZE, Rodino KG, Razonable RR, Abu Saleh OM.	Anaerobe	10.1016/j.anaerobe.2019.102105	2020
	[Bacteremia due to strict anaerobes].	Pina Delgado C, Bolanos Rivero M, Carmona Tello MC, Ramirez Estupinan CJ, Hernandez Cabrera PM, de Miguel Martinez I.	Rev Esp Quimioter	10.37201/req/063.2024	2025
	Fulminant Pseudomembranous Colitis Leading to Clostridium Paraputrificum Bacteremia.	Haider A, Alavi F, Siddiqa A, Abbas H, Patel H.	Cureus	10.7759/cureus.13763	2021
	Gut Bifidobacterium longum is associated with better native liver survival in patients with biliary atresia.	Lee CS, Lin CR, Chua HH, Wu JF, Chang KC, Ni YH, Chang MH, Chen HL.	JHEP Rep	10.1016/j.jhepr.2024.101090	2024
	Gut microbiota and metabolic signatures of anxiety in ulcerative colitis: a cross-sectional study.	Ping Y, Zhao X, Lv L, Meng W, Meng Y, Ruan G, Cheng Y, Xiao Z, Tian Y, Chen M, Chen L, Yi A, Tang Z, Li N, Chen D, Wei Y.	Therap Adv Gastroenterol	10.1177/17562848251393419	2025
	Oral Fecal Microbiota Transplantation in Dogs with Tylosin-Responsive Enteropathy-A Proof-of-Concept Study.	Hanifeh M, Scarsella E, Rojas CA, Ganz HH, Huhtinen M, Laine T, Spillmann T.	Vet Sci	10.3390/vetsci11090439	2024
	Chitosan Oligosaccharide Ameliorates Metabolic Syndrome Induced by Overnutrition via Altering Intestinal Microbiota.	Wang Y, Liu S, Tang D, Dong R, Feng Q.	Front Nutr	10.3389/fnut.2021.743492	2021
	Complementary Feeding and Infant Gut Microbiota: A Narrative Review.	Noles DL, Matzeller KL, Frank DN, Krebs NF, Tang M.	Nutrients	10.3390/nu17050743	2025
Phylogeny	Study on Changes in Gut Microbiota and Microbiability in Rabbits at Different Developmental Stages.	Fu C, Ma Y, Xia S, Shao J, Tang T, Sun W, Jia X, Wang J, Lai S.	Animals (Basel)	10.3390/ani14121741	2024
	Evaluation of the liquid colony for identification and antimicrobial susceptibility testing directly from positive blood cultures.	Maddalena C, Giuseppe M, Perez M, Guido S, Stefania S.	Ann Clin Microbiol Antimicrob	10.1186/s12941-023-00617-8	2023
	In vitro activity of fidaxomicin and combinations of fidaxomicin with other antibiotics against Clostridium perfringens strains isolated from dogs and cats.	Alvarez-Perez S, Anega B, Blanco JL, Hernandez M, Garcia ME.	BMC Vet Res	10.1186/s12917-023-03801-2	2023
Genetics	Metagenome reveals the midgut microbial community of Haemaphysalis qinghaiensis ticks collected from yaks and Tibetan sheep.	Zhang Y, Cheng TY, Liu GH, Liu L, Duan DY.	Parasit Vectors	10.1186/s13071-024-06442-y	2024
Genetics	Metagenomic Characterisation of the Gut Microbiome and Effect of Complementary Feeding on Bifidobacterium spp. in Australian Infants.	Parkin K, Palmer DJ, Verhasselt V, Amenyogbe N, Cooper MN, Christophersen CT, Prescott SL, Silva D, Martino D.	Microorganisms	10.3390/microorganisms12010228	2024
Genetics	Comparative Genomics and Virulence Mechanisms to Identify Genes Related to Mucin O-Glycan Degradation and Pathogenicity in a Potentially Multidrug-Resistant Clostridium tertium Strain.	Kim S, Kang JY, Lee JS.	Microbiologyopen	10.1002/mbo3.70169	2025
	Difference of Microbial Community in the Stream Adjacent to the Mixed Antibiotic Effluent Source.	Kim JW, Hong YK, Kwon OK, Kim SC.	Toxics	10.3390/toxics12020135	2024
Phylogeny	Immunoglobulin secretion influences the composition of chicken caecal microbiota.	Volf J, Kaspers B, Schusser B, Crhanova M, Karasova D, Stepanova H, Babak V, Rychlik I.	Sci Rep	10.1038/s41598-024-76856-2	2024
	Cloak and dagger - secondary hemophygocytic lymphohistiocytosis caused by intravenous autoinfection.	Pircher A, Koeck S, Schatzlmayr J, Finkenstedt A, Nairz M, Wanner D, Griesmacher A, Tilg H, Wolf D, Zoller H.	Am J Hematol	10.1002/ajh.25704	2020
	Analysis of the efficacy of MALDI-TOF MS technology in identifying microorganisms in cancer patients and oncology hospital environment.	Czeszewska-Rosiak G, Adamczyk I, Ludwiczak A, Fijalkowski P, Fijalkowski P, Twaruzek M, Zloch M, Gabrys D, Mista W, Tretyn A, Pomastowski PP.	Heliyon	10.1016/j.heliyon.2025.e42015	2025
	Clostridium paraputrificum Bacteremia in an Older Patient with No Predisposing Medical Condition.	Fukui M, Iwai S, Sakamoto R, Takahashi H, Hayashi T, Kenzaka T.	Intern Med	10.2169/internalmedicine.8164-16	2017
	Gut Microbiome Characteristics in Mothers and Infants According to the Presence of Atopic Dermatitis.	Sung M, Choi Y, Park H, Huh CS.	Biomed Res Int	10.1155/2022/8145462	2022
	Neonatal Diet and Gut Microbiome Development After C-Section During the First Three Months After Birth: A Systematic Review.	Pivrncova E, Kotaskova I, Thon V.	Front Nutr	10.3389/fnut.2022.941549	2022
	Intestinal microbiome changes in an infant with right atrial isomerism and recurrent necrotizing enterocolitis: A case report and review of literature.	Kaplina A, Zaikova E, Ivanov A, Volkova Y, Alkhova T, Nikiforov V, Latypov A, Khavkina M, Fedoseeva T, Pervunina T, Skorobogatova Y, Volkova S, Ulyantsev V, Kalinina O, Sitkin S, Petrova N.	World J Clin Cases	10.12998/wjcc.v10.i29.10583	2022
Phylogeny	Signatures in the gut microbiota of Japanese infants who developed food allergies in early childhood.	Tanaka M, Korenori Y, Washio M, Kobayashi T, Momoda R, Kiyohara C, Kuroda A, Saito Y, Sonomoto K, Nakayama J.	FEMS Microbiol Ecol	10.1093/femsec/fix099	2017
	Genome Sequence of Clostridium paraputrificum 373-A1 Isolated in Chile from a Patient Infected with Clostridium difficile.	Guerrero-Araya E, Plaza-Garrido A, Diaz-Yanez F, Pizaro-Guajardo M, Valenzuela SL, Meneses C, Gil F, Castro-Nallar E, Paredes-Sabja D.	Genome Announc	10.1128/genomea.01178-16	2016
Metabolism	Insights into the global regulation of anaerobic metabolism for improved biohydrogen production.	Lu Y, Zhao H, Zhang C, Xing XH.	Bioresour Technol	10.1016/j.biortech.2015.10.007	2016
	Integrated Metagenomic and Metabolomic Analysis on Two Competing Mussels, Mytella strigata and Perna viridis, in China.	Zuo C, Ma P, Ma X, Zhu Y, Yan S, Zhang Z.	Animals (Basel)	10.3390/ani14060918	2024
	Bisphenol A exposure affects specific gut taxa and drives microbiota dynamics in childhood obesity.	Lopez-Moreno A, Cerk K, Rodrigo L, Suarez A, Aguilera M, Ruiz-Rodriguez A.	mSystems	10.1128/msystems.00957-23	2024
Pathogenicity	Cannabinoids modulate the microbiota-gut-brain axis in HIV/SIV infection by reducing neuroinflammation and dysbiosis while concurrently elevating endocannabinoid and indole-3-propionate levels.	McDew-White M, Lee E, Premadasa LS, Alvarez X, Okeoma CM, Mohan M.	J Neuroinflammation	10.1186/s12974-023-02729-6	2023
Phylogeny	Characterising the Tasmanian devil (Sarcophilus harrisii) pouch microbiome in lactating and non-lactating females.	Ockert LE, McLennan EA, Fox S, Belov K, Hogg CJ.	Sci Rep	10.1038/s41598-024-66097-8	2024
	Clostridium paraputrificum septicemia and liver abscess.	Kwon YK, Cheema FA, Maneckshana BT, Rochon C, Sheiner PA.	World J Hepatol	10.4254/wjh.v10.i3.388	2018
	[A multienzyme bioreactor based on a chitinase complex].	Vlakh EG, Ponomareva EA, Tennikova TB.	Prikl Biokhim Mikrobiol	10.7868/s0555109914050146	2014
	Eggshell and Feed Microbiota Do Not Represent Major Sources of Gut Anaerobes for Chickens in Commercial Production.	Volf J, Crhanova M, Karasova D, Faldynova M, Kubasova T, Seidlerova Z, Sebkova A, Zeman M, Juricova H, Matiasovicova J, Foltyn M, Tvrdon Z, Rychlik I.	Microorganisms	10.3390/microorganisms9071480	2021
Metabolism	Long term methionine restriction: Influence on gut microbiome and metabolic characteristics.	Nagarajan A, Lasher AT, Morrow CD, Sun LY.	Aging Cell	10.1111/acel.14051	2024
	Cloning and sequence analysis of hyaluronoglucosaminidase (nagH) gene of Clostridium chauvoei.	Dangi SK, Yadav PK, Tiwari A, Nagaleekar VK.	Vet World	10.14202/vetworld.2017.1104-1107	2017
Phylogeny	Gut Microbiome Profiles Are Associated With Type 2 Diabetes in Urban Africans.	Doumatey AP, Adeyemo A, Zhou J, Lei L, Adebamowo SN, Adebamowo C, Rotimi CN.	Front Cell Infect Microbiol	10.3389/fcimb.2020.00063	2020
	Isolation of Bacteria from Freeze-Dried Samples and the Functional Characterization of Species-Specific Lactic Acid Bacteria with a Comparison of Wild and Captive Proboscis Monkeys.	Suzuki-Hashido N, Tsuchida S, Azumano A, Goossens B, Saldivar DAR, Stark DJ, Tuuga A, Ushida K, Matsuda I.	Microorganisms	10.3390/microorganisms11061458	2023
Metabolism	Improvement of hydrogen productivity by introduction of NADH regeneration pathway in Clostridium paraputrificum.	Lu Y, Zhang C, Zhao H, Xing XH.	Appl Biochem Biotechnol	10.1007/s12010-012-9703-y	2012
Metabolism	Changes in Plasma Choline and the Betaine-to-Choline Ratio in Response to 6-Month Lifestyle Intervention Are Associated with the Changes of Lipid Profiles and Intestinal Microbiota: The ICAAN Study.	Jang H, Lim H, Park KH, Park S, Lee HJ.	Nutrients	10.3390/nu13114006	2021
	Clostridium paraputrificum Bacteremia Associated with Colonic Necrosis in a Patient with AIDS.	Shinha T, Hadi C.	Case Rep Infect Dis	10.1155/2015/312919	2015
	Gut microbiota in regulatory T cell generation and function: mechanisms and health implications.	Sharma A, Sharma G, Im SH.	Gut Microbes	10.1080/19490976.2025.2516702	2025
	Antibiotic and antifungal use in pediatric leukemia and lymphoma patients are associated with increasing opportunistic pathogens and decreasing bacteria responsible for activities that enhance colonic defense.	Dunn KA, MacDonald T, Rodrigues GJ, Forbrigger Z, Bielawski JP, Langille MGI, Van Limbergen J, Kulkarni K.	Front Cell Infect Microbiol	10.3389/fcimb.2022.924707	2022
Phylogeny	Preterm Infant-Associated Clostridium tertium, Clostridium cadaveris, and Clostridium paraputrificum Strains: Genomic and Evolutionary Insights.	Kiu R, Caim S, Alcon-Giner C, Belteki G, Clarke P, Pickard D, Dougan G, Hall LJ.	Genome Biol Evol	10.1093/gbe/evx210	2017
	Supplementing HIV-ART with cannabinoids increases serotonin, BHB, and Ahr signaling while reducing secondary bile acids and acylcholines.	Premadasa LS, Romero L, Mohan M.	Sci Adv	10.1126/sciadv.adw4021	2025
	Characterizing forensically important insect and microbial community colonization patterns in buried remains.	Iancu L, Junkins EN, Necula-Petrareanu G, Purcarea C.	Sci Rep	10.1038/s41598-018-33794-0	2018
	Compositional and Functional Adaptations of Intestinal Microbiota and Related Metabolites in CKD Patients Receiving Dietary Protein Restriction.	Wu IW, Lee CC, Hsu HJ, Sun CY, Chen YC, Yang KJ, Yang CW, Chung WH, Lai HC, Chang LC, Su SC.	Nutrients	10.3390/nu12092799	2020
	Impacts of a DUF2207 Family Protein on Streptococcus mutans Stress Tolerance Responses and Biofilm Formation.	Huang X, Laird CG, Riley PP, Wen ZT.	Microorganisms	10.3390/microorganisms11081982	2023
Pathogenicity	Effects of Antibiotic Treatment and Probiotics on the Gut Microbiome of 40 Infants Delivered Before Term by Cesarean Section Analysed by Using 16S rRNA Quantitative Polymerase Chain Reaction Sequencing.	Gong C, Yang L, Liu K, Shen S, Zhang Q, Li H, Cheng Y.	Med Sci Monit	10.12659/msm.928467	2021
Phylogeny	Dynamic distribution of gut microbiota in posthatching chicks and its relationship with average daily gain.	Huang T, Han J, Liu Y, Fei M, Du X, He K, Zhao A.	Poult Sci	10.1016/j.psj.2023.103008	2023
	Marine Chitooligosaccharide Alters Intestinal Flora Structure and Regulates Hepatic Inflammatory Response to Influence Nonalcoholic Fatty Liver Disease.	Feng J, Liu Y, Chen J, Bai Y, He J, Cao H, Che Q, Guo J, Su Z.	Mar Drugs	10.3390/md20060383	2022
Metabolism	Glucose fermentation with biochar-amended consortium: microbial consortium shift.	Lu JH, Chen C, Huang C, Lee DJ.	Bioengineered	10.1080/21655979.2020.1735668	2020
	Colonoscopy aspiration lavages for mucosal metataxonomic profiling of spondylarthritis-associated gastrointestinal tract alterations.	Marquez-Ortiz RA, Leon M, Abril D, Escobar-Perez J, Florez-Sarmiento C, Parra-Izquierdo V, Chalem P, Romero-Sanchez C.	Sci Rep	10.1038/s41598-023-33597-y	2023
Pathogenicity	The antimicrobial action of chitosan, low molar mass chitosan, and chitooligosaccharides on human colonic bacteria.	Simunek J, Brandysova V, Koppova I, Simunek J.	Folia Microbiol (Praha)	10.1007/s12223-012-0138-1	2012
	Evaluation of a Screening Method for the Detection of Colistin-Resistant Enterobacteriaceae in Stool.	Turbett SE, Desrosiers L, Andrews-Dunleavey C, Becker M, Walker AT, Esposito D, Woodworth KR, Branda JA, Rosenberg E, Ryan ET, LaRocque R.	Open Forum Infect Dis	10.1093/ofid/ofz211	2019
	Altered Mucosal Immune-Microbiota Interactions in Familial Adenomatous Polyposis.	Noble A, Durant L, Dilke SM, Man R, Martin I, Patel R, Hoyles L, Pring ET, Latchford A, Clark SK, Carding SR, Knight SC.	Clin Transl Gastroenterol	10.14309/ctg.0000000000000428	2022
Metabolism	Interplay between Dysbiosis of Gut Microbiome, Lipid Metabolism, and Tumorigenesis: Can Gut Dysbiosis Stand as a Prognostic Marker in Cancer?	Chattopadhyay I, Gundamaraju R, Jha NK, Gupta PK, Dey A, Mandal CC, Ford BM.	Dis Markers	10.1155/2022/2941248	2022
	Exploring the Ecological Effects of Naturally Antibiotic-Insensitive Bifidobacteria in the Recovery of the Resilience of the Gut Microbiota during and after Antibiotic Treatment.	Argentini C, Mancabelli L, Alessandri G, Tarracchini C, Barbetti M, Carnevali L, Longhi G, Viappiani A, Anzalone R, Milani C, Sgoifo A, van Sinderen D, Ventura M, Turroni F.	Appl Environ Microbiol	10.1128/aem.00522-22	2022
Genetics	Using strain-resolved analysis to identify contamination in metagenomics data.	Lou YC, Hoff J, Olm MR, West-Roberts J, Diamond S, Firek BA, Morowitz MJ, Banfield JF.	Microbiome	10.1186/s40168-023-01477-2	2023
Phylogeny	Association of gut microbiota and SCFAs with finishing weight of Diannan small ear pigs.	Lan Q, Lian Y, Peng P, Yang L, Zhao H, Huang P, Ma H, Wei H, Yin Y, Liu M.	Front Microbiol	10.3389/fmicb.2023.1117965	2023
	A pilot study of dietary fibres on pathogen growth in an ex vivo colonic model reveals their potential ability to limit vancomycin-resistant Enterococcus expansion.	Strain R, Tran TTT, Mills S, Stanton C, Ross RP.	Microbiome Res Rep	10.20517/mrr.2022.14	2023
Pathogenicity	Targeted inhibition of Gus-expressing Enterococcus faecalis to promote intestinal stem cell and epithelial renovation contributes to the relief of irinotecan chemotoxicity by dehydrodiisoeugenol.	Gao R, Yue B, Lv C, Geng X, Yu Z, Wang H, Zhang B, Ai F, Wang Z, Liu D, Wang Z, Chen K, Dou W.	Acta Pharm Sin B	10.1016/j.apsb.2024.09.018	2024
	Key bacterial taxa determine longitudinal dynamics of aromatic amino acid catabolism in infants' gut.	Laursen MF, Sinha AK, Sinha AK, Pedersen M, Roager HM.	Gut Microbes	10.1080/19490976.2023.2221426	2023
	Property and Function of a Novel Chitinase Containing Dual Catalytic Domains Capable of Converting Chitin Into N-Acetyl-D-Glucosamine.	Wang C, Chen X, Zhou N, Chen Y, Zhang A, Chen K, Ouyang P.	Front Microbiol	10.3389/fmicb.2022.790301	2022
	Strain-specific alterations in gut microbiome and host immune responses elicited by tolerogenic Bifidobacterium pseudolongum.	Ma B, Gavzy SJ, Saxena V, Song Y, Piao W, Lwin HW, Lakhan R, Iyyathurai J, Li L, France M, Paluskievicz C, Shirkey MW, Hittle L, Munawwar A, Mongodin EF, Bromberg JS.	Sci Rep	10.1038/s41598-023-27706-0	2023
Enzymology	Identification of a catalytic residue of Clostridium paraputrificum N-acetyl-beta-D-glucosaminidase Nag3A by site-directed mutagenesis.	Li H, Zhao G, Miyake H, Umekawa H, Kimura T, Ohmiya K, Sakka K.	Biosci Biotechnol Biochem	10.1271/bbb.70.1127	2006
Metabolism	Microbiota matures colonic epithelium through a coordinated induction of cell cycle-related proteins in gnotobiotic rat.	Cherbuy C, Honvo-Houeto E, Bruneau A, Bridonneau C, Mayeur C, Duee PH, Langella P, Thomas M.	Am J Physiol Gastrointest Liver Physiol	10.1152/ajpgi.00384.2009	2010
Metabolism	Characteristics of hydrogen and methane production from cornstalks by an augmented two- or three-stage anaerobic fermentation process.	Lu Y, Lai Q, Zhang C, Zhao H, Ma K, Zhao X, Chen H, Liu D, Xing XH.	Bioresour Technol	10.1016/j.biortech.2009.01.023	2009
Metabolism	Overexpression of a hydrogenase gene in Clostridium paraputrificum to enhance hydrogen gas production.	Morimoto K, Kimura T, Sakka K, Ohmiya K.	FEMS Microbiol Lett	10.1016/j.femsle.2005.04.014	2005
	Alterations in ileal mucosa bacteria related to diet complexity and growth performance in young pigs.	Levesque CL, Hooda S, Swanson KS, de Lange K.	PLoS One	10.1371/journal.pone.0108472	2014
Genetics	Metagenomics uncovers dietary adaptations for chitin digestion in the gut microbiota of convergent myrmecophagous mammals.	Teullet S, Tilak M-K, Magdeleine A, Schaub R, Weyer NM, Panaino W, Fuller A, Loughry WJ, Avenant NL, de Thoisy B, Borrel G, Delsuc F.	mSystems	10.1128/msystems.00388-23	2023
Pathogenicity	Sex differences in colonization of gut microbiota from a man with short-term vegetarian and inulin-supplemented diet in germ-free mice.	Wang JJ, Wang J, Pang XY, Zhao LP, Tian L, Wang XP.	Sci Rep	10.1038/srep36137	2016
Enzymology	The Fecal Metagenomics of Malayan Pangolins Identifies an Extensive Adaptation to Myrmecophagy.	Ma JE, Jiang HY, Li LM, Zhang XJ, Li GY, Li HM, Jin XJ, Chen JP.	Front Microbiol	10.3389/fmicb.2018.02793	2018
Enzymology	Comparing culture and molecular methods for the identification of microorganisms involved in necrotizing soft tissue infections.	Rudkjobing VB, Thomsen TR, Xu Y, Melton-Kreft R, Ahmed A, Eickhardt S, Bjarnsholt T, Poulsen SS, Nielsen PH, Earl JP, Ehrlich GD, Moser C.	BMC Infect Dis	10.1186/s12879-016-1976-2	2016
	Gut microbial genomes with paired isolates from China illustrate probiotic and cardiometabolic effects.	Huang P, Dong Q, Wang Y, Tian Y, Wang S, Zhang C, Yu L, Tian F, Gao X, Guo H, Yi S, Li M, Liu Y, Zhang Q, Lu W, Wang G, Yang B, Cui S, Hua D, Wang X, Jiao Y, Liu L, Deng Q, Ma B, Wu T, Zou H, Shi J, Zhang H, Fan D, Sheng Y, Zhao J, Tang L, Zhang H, Sun W, CGMR Consortium, Chen W, Kong X, Chen L, Zhai Q.	Cell Genom	10.1016/j.xgen.2024.100559	2024
Phylogeny	Post-Mortem Interval and Microbiome Analysis through 16S rRNA Analysis: A Systematic Review.	Tozzo P, Amico I, Delicati A, Toselli F, Caenazzo L.	Diagnostics (Basel)	10.3390/diagnostics12112641	2022
	Association between endotoxemia and enterocyte injury and clinical course in patients with gram-positive septic shock: A posthoc analysis of a prospective observational study.	Sekino M, Funaoka H, Sato S, Egashira T, Inoue H, Yano R, Matsumoto S, Ichinomiya T, Higashijima U, Matsumoto S, Hara T.	Medicine (Baltimore)	10.1097/md.0000000000016452	2019
	Yeast beta-Glucan Improves Insulin Sensitivity and Hepatic Lipid Metabolism in Mice Humanized with Obese Type 2 Diabetic Gut Microbiota.	Mitchelson KAJ, Tran TTT, Dillon ET, Vlckova K, Harrison SM, Ntemiri A, Cunningham K, Gibson I, Finucane FM, O'Connor EM, Roche HM, O'Toole PW.	Mol Nutr Food Res	10.1002/mnfr.202100819	2022
	Empyema caused by Clostridium bifermentans: A case report.	Edagiz S, Lagace-Wiens P, Embil J, Karlowsky J, Walkty A.	Can J Infect Dis Med Microbiol	10.1155/2015/481076	2015
	Breastfeeding and the major fermentation metabolite lactate determine occurrence of Peptostreptococcaceae in infant feces.	Huertas-Diaz L, Kyhnau R, Ingribelli E, Neuzil-Bunesova V, Li Q, Sasaki M, Lauener RP, Roduit C, Frei R, Study Group CC, Sundekilde U, Schwab C.	Gut Microbes	10.1080/19490976.2023.2241209	2023
Metabolism	Differential Effects of Sulfur Amino Acid-Restricted and Low-Calorie Diets on Gut Microbiome Profile and Bile Acid Composition in Male C57BL6/J Mice.	Nichenametla SN, Mattocks DAL, Midya V, Shneyder J.	J Gerontol A Biol Sci Med Sci	10.1093/gerona/glaa270	2021
Enzymology	Multidisciplinary evaluation of Clostridium butyricum clonality isolated from preterm neonates with necrotizing enterocolitis in South France between 2009 and 2017.	Hosny M, Bou Khalil JY, Caputo A, Abdallah RA, Levasseur A, Colson P, Cassir N, La Scola B.	Sci Rep	10.1038/s41598-019-38773-7	2019
	Recent Advances in the Physicochemical Properties and Biotechnological Application of Vitreoscilla Hemoglobin.	Yu F, Zhao X, Wang Z, Liu L, Yi L, Zhou J, Li J, Chen J, Du G.	Microorganisms	10.3390/microorganisms9071455	2021
Enzymology	Detection and quantification of four species of the genus Clostridium in infant feces.	Tonooka T, Sakata S, Kitahara M, Hanai M, Ishizeki S, Takada M, Sakamoto M, Benno Y.	Microbiol Immunol	10.1111/j.1348-0421.2005.tb03694.x	2005
Phylogeny	Identification and characterization of Clostridium paraputrificum, a chitinolytic bacterium of human digestive tract.	Simunek J, Kopecny J, Hodrova B, Bartonova H.	Folia Microbiol (Praha)	10.1007/bf02818798	2002
Metabolism	Structure-activity relationship study on the bioreduction of azo dyes by Clostridium paraputrificum.	Moir D, Masson S, Chu I.	Environ Toxicol Chem	10.1002/etc.5620200304	2001
	Characterization of Clostridium paraputrificum chitinase A from a recombinant Escherichia coli.	Morimoto K, Karita S, Kimura T, Sakka K, Ohmiya K.	J Biosci Bioeng	10.1263/jbb.92.466	2001
	The fermentation of lactulose in rats inoculated with Clostridium paraputrificum influences the activities of liver and intestinal xenobiotic-metabolising enzymes	Lhoste EF, Nugon-Baudon L, Lory S, Meslin JC, Andrieux C.	J Sci Food Agric	10.1002/jsfa.957	2001
Pathogenicity	Differential influence of butyrate concentration on proximal and distal colonic mucosa in rats born germ-free and associated with a strain of Clostridium paraputrificum.	Meslin JC, Bensaada M, Popot F, Andrieux C.	Comp Biochem Physiol A Mol Integr Physiol	10.1016/s1095-6433(00)00317-2	2001
Phylogeny	Characterization of culturable anaerobic bacteria from the forestomach of an eastern grey kangaroo, Macropus giganteus.	Ouwerkerk D, Klieve AV, Forster RJ, Templeton JM, Maguire AJ.	Lett Appl Microbiol	10.1111/j.1472-765x.2005.01774.x	2005
Pathogenicity	Selective growth-inhibiting effects of compounds identified in Tabebuia impetiginosa inner bark on human intestinal bacteria.	Park BS, Kim JR, Lee SE, Kim KS, Takeoka GR, Ahn YJ, Kim JH.	J Agric Food Chem	10.1021/jf0486038	2005
	Identification and characterization of Clostridium paraputrificum M-21, a chitinolytic, mesophilic and hydrogen-producing bacterium.	Evvyernie D, Yamazaki S, Morimoto K, Karita S, Kimura T, Sakka K, Ohmiya K.	J Biosci Bioeng	10.1016/s1389-1723(00)80063-8	2000
Enzymology	Expression of mitochondrial HMGCoA synthase and glutaminase in the colonic mucosa is modulated by bacterial species.	Cherbuy C, Andrieux C, Honvo-Houeto E, Thomas M, Ide C, Druesne N, Chaumontet C, Darcy-Vrillon B, Duee PH.	Eur J Biochem	10.1046/j.1432-1033.2003.03908.x	2004
	Debottlenecking the biological hydrogen production pathway of dark fermentation: insight into the impact of strain improvement.	Cao Y, Liu H, Liu W, Guo J, Xian M.	Microb Cell Fact	10.1186/s12934-022-01893-3	2022
Phylogeny	Application of rrs gene sequencing to elucidate the clinical significance of Eggerthela lenta infection.	Landais C, Doudier B, Imbert G, Fenollar F, Brouqui P.	J Clin Microbiol	10.1128/jcm.01805-06	2007
	Understanding the ADHD-Gut Axis by Metabolic Network Analysis.	Tas E, Ulgen KO.	Metabolites	10.3390/metabo13050592	2023
	Biofilms harbour Clostridioides difficile, serving as a reservoir for recurrent infection.	Normington C, Moura IB, Bryant JA, Ewin DJ, Clark EV, Kettle MJ, Harris HC, Spittal W, Davis G, Henn MR, Ford CB, Wilcox MH, Buckley AM.	NPJ Biofilms Microbiomes	10.1038/s41522-021-00184-w	2021
Genetics	Longitudinal fecal microbiome and metabolite data demonstrate rapid shifts and subsequent stabilization after an abrupt dietary change in healthy adult dogs.	Lin CY, Jha AR, Oba PM, Yotis SM, Shmalberg J, Honaker RW, Swanson KS.	Anim Microbiome	10.1186/s42523-022-00194-9	2022
	Toxoplasma gondii Chitinase Induces Macrophage Activation.	Almeida F, Sardinha-Silva A, da Silva TA, Pessoni AM, Pinzan CF, Alegre-Maller AC, Cecilio NT, Moretti NS, Damasio AR, Pedersoli WR, Mineo JR, Silva RN, Roque-Barreira MC.	PLoS One	10.1371/journal.pone.0144507	2015
	Sequencing, expression, and transcription analysis of the Clostridium paraputrificum chiA gene encoding chitinase ChiA.	Morimoto K, Karita S, Kimura T, Sakka K, Ohmiya K.	Appl Microbiol Biotechnol	10.1007/s002530051400	1999
Enzymology	Comparison of four microbial enzymes in Clostridia and Bacteroides isolated from human feces.	Nakamura J, Kubota Y, Miyaoka M, Saitoh T, Mizuno F, Benno Y.	Microbiol Immunol	10.1111/j.1348-0421.2002.tb02723.x	2002
Enzymology	Chitinase Chi1 from Myceliophthora thermophila C1, a Thermostable Enzyme for Chitin and Chitosan Depolymerization.	Krolicka M, Hinz SWA, Koetsier MJ, Joosten R, Eggink G, van den Broek LAM, Boeriu CG.	J Agric Food Chem	10.1021/acs.jafc.7b04032	2018
Pathogenicity	Early-life gut dysbiosis linked to juvenile mortality in ostriches.	Videvall E, Song SJ, Bensch HM, Strandh M, Engelbrecht A, Serfontein N, Hellgren O, Olivier A, Cloete S, Knight R, Cornwallis CK.	Microbiome	10.1186/s40168-020-00925-7	2020
	Host phylogeny and life history stage shape the gut microbiome in dwarf (Kogia sima) and pygmy (Kogia breviceps) sperm whales.	Denison ER, Rhodes RG, McLellan WA, Pabst DA, Erwin PM.	Sci Rep	10.1038/s41598-020-72032-4	2020
	Longitudinal assessment of taurine and amino acid concentrations in dogs fed a green lentil diet.	Reilly LM, He F, Clark L, de Godoy MRC.	J Anim Sci	10.1093/jas/skab315	2021
	A compendium of 32,277 metagenome-assembled genomes and over 80 million genes from the early-life human gut microbiome.	Zeng S, Patangia D, Almeida A, Zhou Z, Mu D, Paul Ross R, Stanton C, Wang S.	Nat Commun	10.1038/s41467-022-32805-z	2022
Genetics	Taxonogenomic description of four new Clostridium species isolated from human gut: 'Clostridium amazonitimonense', 'Clostridium merdae', 'Clostridium massilidielmoense' and 'Clostridium nigeriense'.	Alou MT, Ndongo S, Fregere L, Labas N, Andrieu C, Richez M, Couderc C, Baudoin JP, Abrahao J, Brah S, Diallo A, Sokhna C, Cassir N, La Scola B, Cadoret F, Raoult D.	New Microbes New Infect	10.1016/j.nmni.2017.11.003	2018
Metabolism	A commensal-encoded genotoxin drives restriction of Vibrio cholerae colonization and host gut microbiome remodeling.	Chen J, Byun H, Liu R, Jung IJ, Pu Q, Zhu CY, Tanchoco E, Alavi S, Degnan PH, Ma AT, Roggiani M, Beld J, Goulian M, Hsiao A, Zhu J.	Proc Natl Acad Sci U S A	10.1073/pnas.2121180119	2022
	Influence of gut microbiota on mucosal IgA antibody response to the polio vaccine.	Zhao T, Li J, Fu Y, Ye H, Liu X, Li G, Yang X, Yang J.	NPJ Vaccines	10.1038/s41541-020-0194-5	2020
	Ethanol production from N-acetyl-D-glucosamine by Scheffersomyces stipitis strains.	Inokuma K, Hasunuma T, Kondo A.	AMB Express	10.1186/s13568-016-0267-z	2016
Pathogenicity	Cordycepin: selective growth inhibitor derived from liquid culture of Cordyceps militaris against Clostridium spp.	Ahn YJ, Park SJ, Lee SG, Shin SC, Choi DH.	J Agric Food Chem	10.1021/jf990862n	2000
	Update in pathogenesis and prospective in treatment of necrotizing enterocolitis.	Terrin G, Scipione A, De Curtis M.	Biomed Res Int	10.1155/2014/543765	2014
Phylogeny	Timing of complementary feeding is associated with gut microbiota diversity and composition and short chain fatty acid concentrations over the first year of life.	Differding MK, Benjamin-Neelon SE, Hoyo C, Ostbye T, Mueller NT.	BMC Microbiol	10.1186/s12866-020-01723-9	2020
Phylogeny	Age-Related Differences in the Luminal and Mucosa-Associated Gut Microbiome of Broiler Chickens and Shifts Associated with Campylobacter jejuni Infection.	Awad WA, Mann E, Dzieciol M, Hess C, Schmitz-Esser S, Wagner M, Hess M.	Front Cell Infect Microbiol	10.3389/fcimb.2016.00154	2016
	Effects of intestinal bacteria on the development of colonic neoplasm: an experimental study.	Horie H, Kanazawa K, Okada M, Narushima S, Itoh K, Terada A.	Eur J Cancer Prev	10.1097/00008469-199906000-00012	1999
Genetics	Probing Genomic Aspects of the Multi-Host Pathogen Clostridium perfringens Reveals Significant Pangenome Diversity, and a Diverse Array of Virulence Factors.	Kiu R, Caim S, Alexander S, Pachori P, Hall LJ.	Front Microbiol	10.3389/fmicb.2017.02485	2017
Pathogenicity	A Novel Non-Digestible, Carrot-Derived Polysaccharide (cRG-I) Selectively Modulates the Human Gut Microbiota while Promoting Gut Barrier Integrity: An Integrated in Vitro Approach.	Van den Abbeele P, Verstrepen L, Ghyselinck J, Albers R, Marzorati M, Mercenier A.	Nutrients	10.3390/nu12071917	2020
Pathogenicity	Growth-inhibiting effects of Coptis japonica root-derived isoquinoline alkaloids on human intestinal bacteria.	Chae SH, Jeong IH, Choi DH, Oh JW, Ahn YJ.	J Agric Food Chem	10.1021/jf980991o	1999
	Clostridia in premature neonates' gut: incidence, antibiotic susceptibility, and perinatal determinants influencing colonization.	Ferraris L, Butel MJ, Campeotto F, Vodovar M, Roze JC, Aires J.	PLoS One	10.1371/journal.pone.0030594	2012
Enzymology	The desA and desB genes from Clostridium scindens ATCC 35704 encode steroid-17,20-desmolase.	Devendran S, Mythen SM, Ridlon JM.	J Lipid Res	10.1194/jlr.m083949	2018
Metabolism	Preparation of 3-ketodesogestrel metabolites by microbial transformation and chemical synthesis.	Groh H, Schon R, Ritzau M, Kasch H, Undisz K, Hobe G.	Steroids	10.1016/s0039-128x(97)00014-7	1997
	Necrotizing enterocolitis associated with Clostridium paraputrificum septicemia.	Shandera WX, Humphrey RL, Stratton LB.	South Med J	10.1097/00007611-198802000-00037	1988
Enzymology	Characterization of NADP-dependent 12 beta-hydroxysteroid dehydrogenase from Clostridium paraputrificum.	Edenharder R, Pfutzner A.	Biochim Biophys Acta	10.1016/0005-2760(88)90266-4	1988
Enzymology	Caecal microbiota compositions from 7-day-old chicks reared in high-performance and low-performance industrial farms and systematic culturomics to select strains with anti-Campylobacter activity.	Duquenoy A, Ania M, Boucher N, Reynier F, Boucinha L, Andreoni C, Thomas V.	PLoS One	10.1371/journal.pone.0237541	2020
Enzymology	Effect of rice fiber on human fecal microflora.	Benno Y, Endo K, Miyoshi H, Okuda T, Koishi H, Mitsuoka T.	Microbiol Immunol	10.1111/j.1348-0421.1989.tb01992.x	1989
	Temporal dynamics of the very premature infant gut dominant microbiota.	Aujoulat F, Roudiere L, Picaud JC, Jacquot A, Filleron A, Neveu D, Baum TP, Marchandin H, Jumas-Bilak E.	BMC Microbiol	10.1186/s12866-014-0325-0	2014
	Microbiomes of unreactive and pathologically altered ileocecal lymph nodes of slaughter pigs.	Mann E, Dzieciol M, Metzler-Zebeli BU, Wagner M, Schmitz-Esser S.	Appl Environ Microbiol	10.1128/aem.03089-13	2014
Phylogeny	Hybridization analysis of the class P tetracycline resistance determinant from the Clostridium perfringens R-plasmid, pCW3.	Abraham LJ, Berryman DI, Rood JI.	Plasmid	10.1016/0147-619x(88)90050-9	1988
Pathogenicity	Dose-response effect of berberine on bile acid profile and gut microbiota in mice.	Guo Y, Zhang Y, Huang W, Selwyn FP, Klaassen CD.	BMC Complement Altern Med	10.1186/s12906-016-1367-7	2016
	Clostridium paraputrificum sepsis in sickle cell anemia.	Brook I, Gluck RS.	South Med J	10.1097/00007611-198012000-00033	1980
Genetics	Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development.	Raveh-Sadka T, Thomas BC, Singh A, Firek B, Brooks B, Castelle CJ, Sharon I, Baker R, Good M, Morowitz MJ, Banfield JF.	Elife	10.7554/elife.05477	2015
Pathogenicity	In vitro activities of daptomycin, vancomycin, quinupristin- dalfopristin, linezolid, and five other antimicrobials against 307 gram-positive anaerobic and 31 Corynebacterium clinical isolates.	Goldstein EJ, Citron DM, Merriam CV, Warren YA, Tyrrell KL, Fernandez HT.	Antimicrob Agents Chemother	10.1128/aac.47.1.337-341.2003	2003
Enzymology	Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants.	Raveh-Sadka T, Firek B, Sharon I, Baker R, Brown CT, Thomas BC, Morowitz MJ, Banfield JF.	ISME J	10.1038/ismej.2016.83	2016
Metabolism	Influence of 1-double bond and 11 beta-hydroxy group on stereospecific microbial reductions of 4-en-3-oxo-steroids.	Kaufmann G, Schumann G, Horhold C.	J Steroid Biochem	10.1016/0022-4731(86)90403-6	1986
Enzymology	The endochitinase ChiA Btt of Bacillus thuringiensis subsp. tenebrionis DSM-2803 and its potential use to control the phytopathogen Colletotrichum gloeosporioides.	de la Fuente-Salcido NM, Casados-Vazquez LE, Garcia-Perez AP, Barboza-Perez UE, Bideshi DK, Salcedo-Hernandez R, Garcia-Almendarez BE, Barboza-Corona JE.	Microbiologyopen	10.1002/mbo3.372	2016
	Preparation of 3 beta, 5 alpha-, 3 alpha, 5 alpha- and 3 alpha, 5 beta-tetrahydro derivatives of 19-noraldosterone by chemical synthesis and microbial bioconversion.	Harnik M, Kashman Y, Carmely S, Cojocaru M.	J Steroid Biochem	10.1016/0022-4731(88)90211-7	1988
Genetics	Going from microbial ecology to genome data and back: studies on a haloalkaliphilic bacterium isolated from Soap Lake, Washington State.	Mormile MR.	Front Microbiol	10.3389/fmicb.2014.00628	2014
Metabolism	Influence of a 9-double bond on stereospecific microbial 4,5-reductions.	Schubert K, Schumann G, Kaufmann G.	J Steroid Biochem	10.1016/0022-4731(83)90333-3	1983
	Gallotannin-Enriched Extract Isolated from Galla Rhois May Be a Functional Candidate with Laxative Effects for Treatment of Loperamide-Induced Constipation of SD Rats.	Kim JE, Go J, Koh EK, Song SH, Sung JE, Lee HA, Lee YH, Hong JT, Hwang DY.	PLoS One	10.1371/journal.pone.0161144	2016
	Microbiota and Drug Response in Inflammatory Bowel Disease.	Franzin M, Stefancic K, Lucafo M, Decorti G, Stocco G.	Pathogens	10.3390/pathogens10020211	2021
Metabolism	Reduction of 17-keto steroids by anaerobic microorganisms isolated from human fecal flora.	Winter J, O'Rourke-Locascio S, Bokkenheuser VD, Mosbach EH, Cohen BI.	Biochim Biophys Acta	10.1016/0005-2760(84)90067-5	1984
Metabolism	Transformation of 4-androsten-3,17-dione by growing cultures and cell extracts of Clostridium paraputrificum.	Glass TL, Wheeler LA, Sutter VL, Finegold SM.	Biochim Biophys Acta	10.1016/0005-2760(79)90066-3	1979
Metabolism	Bacterial formation of aldosterone metabolites.	Winter J, Shackleton CH, O'Rourke S, Bokkenheuser VD.	J Steroid Biochem	10.1016/0022-4731(84)90332-7	1984
Enzymology	Distinctive molecular and biochemical characteristics of a glycoside hydrolase family 20 beta-N-acetylglucosaminidase and salt tolerance.	Zhou J, Song Z, Zhang R, Liu R, Wu Q, Li J, Tang X, Xu B, Ding J, Han N, Huang Z.	BMC Biotechnol	10.1186/s12896-017-0358-1	2017
Enzymology	Characterization of delta 4-3-ketosteroid-5 beta-reductase and 3 beta-hydroxysteroid dehydrogenase in cell extracts of Clostridium innocuum.	Stokes NA, Hylemon PB.	Biochim Biophys Acta	10.1016/0005-2760(85)90073-6	1985
Metabolism	Tetra- and hexahydro derivatives of aldosterone and 18-hydroxycorticosterone by chemical and microbial reductions.	Harnik M, Aharonowitz Y, Lamed R, Kashman Y.	J Steroid Biochem	10.1016/0022-4731(83)91119-6	1983
Metabolism	Cloning, sequencing, and expression of the gene encoding Clostridium paraputrificum chitinase ChiB and analysis of the functions of novel cadherin-like domains and a chitin-binding domain.	Morimoto K, Karita S, Kimura T, Sakka K, Ohmiya K.	J Bacteriol	10.1128/jb.179.23.7306-7314.1997	1997
Metabolism	Formation of 20 beta-dihydrosteroids by anaerobic bacteria.	Winter J, Cerone-McLernon A, O'Rourke S, Ponticorvo L, Bokkenheuser VD.	J Steroid Biochem	10.1016/0022-4731(82)90568-4	1982
	The intestinal microflora of infants: composition of fecal flora in breast-fed and bottle-fed infants.	Benno Y, Sawada K, Mitsuoka T.	Microbiol Immunol	10.1111/j.1348-0421.1984.tb00754.x	1984
	Inhibitory effect of some intestinal bacteria on liver tumorigenesis in gnotobiotic C3H/He male mice.	Mizutani T, Mitsuoka T.	Cancer Lett	10.1016/0304-3835(80)90098-1	1980
Metabolism	Growth of hyperthermophilic archaeon Pyrococcus furiosus on chitin involves two family 18 chitinases.	Gao J, Bauer MW, Shockley KR, Pysz MA, Kelly RM.	Appl Environ Microbiol	10.1128/aem.69.6.3119-3128.2003	2003
	Evidence against significant 19-nor-deoxycorticosterone production in patients with 17 alpha-hydroxylase deficiency.	Shackleton CH.	Clin Exp Hypertens A	10.3109/10641968209061623	1982
Metabolism	Bacterial metabolism of corticoids with particular reference to the 21-dehydroxylation.	Winter J, Bokkenheuser VD, Ponticorvo L.	J Biol Chem	10.1016/s0021-9258(17)30117-5	1979
Pathogenicity	Genetic organization and distribution of tetracycline resistance determinants in Clostridium perfringens.	Lyras D, Rood JI.	Antimicrob Agents Chemother	10.1128/aac.40.11.2500	1996
	Galacto-oligosaccharides and Colorectal Cancer: Feeding our Intestinal Probiome.	Bruno-Barcena JM, Azcarate-Peril MA.	J Funct Foods	10.1016/j.jff.2014.10.029	2015
	Bacteria and bacterial rRNA genes associated with the development of colitis in IL-10(-/-) mice.	Ye J, Lee JW, Presley LL, Bent E, Wei B, Braun J, Schiller NL, Straus DS, Borneman J.	Inflamm Bowel Dis	10.1002/ibd.20442	2008
Enzymology	Cloning and characterization of the polyhydroxybutyrate depolymerase gene of Pseudomonas stutzeri and analysis of the function of substrate-binding domains.	Ohura T, Kasuya KI, Doi Y.	Appl Environ Microbiol	10.1128/aem.65.1.189-197.1999	1999
	Gas-forming clostridial mycotic aneurysm of the abdominal aorta. A case report.	Babenco GO, Joffe N, Tischler AS, Kasdon E.	Angiology	10.1177/000331977602701007	1976
Enzymology	Clostridia isolated from faeces.	Drasar BS, Goddard P, Heaton S, Peach S, West B.	J Med Microbiol	10.1099/00222615-9-1-63	1976
Metabolism	Isolation of nitrofurantoin-resistant mutants of nitroreductase-producing Clostridium sp. strains from the human intestinal tract.	Rafii F, Hansen EB.	Antimicrob Agents Chemother	10.1128/aac.42.5.1121	1998
Metabolism	The nuclear dehydrogenation of steroids by intestinal bacteria.	Goddard P, Fernandez F, West B, Hill MJ, Barnes P.	J Med Microbiol	10.1099/00222615-8-3-429	1975
Metabolism	Behavior of lactobacilli isolated from fermented slurry (ben-saalga) in gnotobiotic rats.	Turpin W, Humblot C, Noordine ML, Wrzosek L, Tomas J, Mayeur C, Cherbuy C, Guyot JP, Thomas M.	PLoS One	10.1371/journal.pone.0057711	2013
	The bacteriology of pouchitis: a molecular phylogenetic analysis using 16S rRNA gene cloning and sequencing.	McLaughlin SD, Walker AW, Churcher C, Clark SK, Tekkis PP, Johnson MW, Parkhill J, Ciclitira PJ, Dougan G, Nicholls RJ, Petrovska L.	Ann Surg	10.1097/sla.0b013e3181e3dc8b	2010
Enzymology	[Application of microbial enzymes in studies of steroid metabolism (author's transl)].	Schlegel J, Schubert K.	Acta Microbiol Acad Sci Hung		1975
	Measurement of bacterial replication rates in microbial communities.	Brown CT, Olm MR, Thomas BC, Banfield JF.	Nat Biotechnol	10.1038/nbt.3704	2016
Enzymology	3alpha-, 7alpha- and 12alpha-hydroxysteroid dehydrogenase activities from Clostridium perfringens.	Macdonald IA, Meier EC, Mahony DE, Costain GA.	Biochim Biophys Acta	10.1016/0005-2760(76)90086-2	1976
Enzymology	Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas.	Shen XJ, Rawls JF, Randall T, Burcal L, Mpande CN, Jenkins N, Jovov B, Abdo Z, Sandler RS, Keku TO.	Gut Microbes	10.4161/gmic.1.3.12360	2010
Metabolism	12 beta-dehydrogenation of bile acids by Clostridium paraputrificum, C. tertium, and C. difficile and epimerization at carbon-12 of deoxycholic acid by cocultivation with 12 alpha-dehydrogenating Eubacterium lentum.	Edenharder R, Schneider J.	Appl Environ Microbiol	10.1128/aem.49.4.964-968.1985	1985
	Aberrant composition of gut microbiota of allergic infants: a target of bifidobacterial therapy at weaning?	Kirjavainen PV, Arvola T, Salminen SJ, Isolauri E.	Gut	10.1136/gut.51.1.51	2002
Phylogeny	Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes.	Earl JP, Adappa ND, Krol J, Bhat AS, Balashov S, Ehrlich RL, Palmer JN, Workman AD, Blasetti M, Sen B, Hammond J, Cohen NA, Ehrlich GD, Mell JC.	Microbiome	10.1186/s40168-018-0569-2	2018
Pathogenicity	Barcoded pyrosequencing reveals that consumption of galactooligosaccharides results in a highly specific bifidogenic response in humans.	Davis LM, Martinez I, Walter J, Goin C, Hutkins RW.	PLoS One	10.1371/journal.pone.0025200	2011
Metabolism	Inactivation of contraceptive steroid hormones by human intestinal clostridia.	Bokkenheuser VD, Winter J, Cohen BI, O'Rourke S, Mosbach EH.	J Clin Microbiol	10.1128/jcm.18.3.500-504.1983	1983
	A Streamlined Strategy for Biohydrogen Production with Halanaerobium hydrogeniformans, an Alkaliphilic Bacterium.	Begemann MB, Mormile MR, Sitton OC, Wall JD, Elias DA.	Front Microbiol	10.3389/fmicb.2012.00093	2012
	Markers of collagen synthesis and degradation are increased in serum in severe sepsis: a longitudinal study of 44 patients.	Gaddnas F, Koskela M, Koivukangas V, Risteli J, Oikarinen A, Laurila J, Saarnio J, Ala-Kokko T.	Crit Care	10.1186/cc7780	2009
Pathogenicity	Antibiotics modulate intestinal immunity and prevent necrotizing enterocolitis in preterm neonatal piglets.	Jensen ML, Thymann T, Cilieborg MS, Lykke M, Molbak L, Jensen BB, Schmidt M, Kelly D, Mulder I, Burrin DG, Sangild PT.	Am J Physiol Gastrointest Liver Physiol	10.1152/ajpgi.00213.2013	2014
Metabolism	Reduction of nitroaromatic compounds by anaerobic bacteria isolated from the human gastrointestinal tract.	Rafil F, Franklin W, Heflich RH, Cerniglia CE.	Appl Environ Microbiol	10.1128/aem.57.4.962-968.1991	1991
Enzymology	Cloning, sequencing, and expression of the chitinase gene chiA74 from Bacillus thuringiensis.	Barboza-Corona JE, Nieto-Mazzocco E, Velazquez-Robledo R, Salcedo-Hernandez R, Bautista M, Jimenez B, Ibarra JE.	Appl Environ Microbiol	10.1128/aem.69.2.1023-1029.2003	2003
Metabolism	Cloning and hybridization analysis of ermP, a macrolide-lincosamide-streptogramin B resistance determinant from Clostridium perfringens.	Berryman DI, Rood JI.	Antimicrob Agents Chemother	10.1128/aac.33.8.1346	1989
Enzymology	Azoreductase activity of anaerobic bacteria isolated from human intestinal microflora.	Rafii F, Franklin W, Cerniglia CE.	Appl Environ Microbiol	10.1128/aem.56.7.2146-2151.1990	1990
Enzymology	Functional analysis of the carbohydrate-binding domains of Erwinia chrysanthemi Cel5 (Endoglucanase Z) and an Escherichia coli putative chitinase.	Simpson HD, Barras F.	J Bacteriol	10.1128/jb.181.15.4611-4616.1999	1999
Phylogeny	Molecular monitoring of succession of bacterial communities in human neonates.	Favier CF, Vaughan EE, De Vos WM, Akkermans AD.	Appl Environ Microbiol	10.1128/aem.68.1.219-226.2002	2002
Metabolism	Identification and characterization of the gene cluster involved in chitin degradation in a marine bacterium, Alteromonas sp. strain O-7.	Tsujibo H, Orikoshi H, Baba N, Miyahara M, Miyamoto K, Yasuda M, Inamori Y.	Appl Environ Microbiol	10.1128/aem.68.1.263-270.2002	2002
Enzymology	A unique chitinase with dual active sites and triple substrate binding sites from the hyperthermophilic archaeon Pyrococcus kodakaraensis KOD1.	Tanaka T, Fujiwara S, Nishikori S, Fukui T, Takagi M, Imanaka T.	Appl Environ Microbiol	10.1128/aem.65.12.5338-5344.1999	1999
Metabolism	Expression and characterization of the chitin-binding domain of chitinase A1 from Bacillus circulans WL-12.	Hashimoto M, Ikegami T, Seino S, Ohuchi N, Fukada H, Sugiyama J, Shirakawa M, Watanabe T.	J Bacteriol	10.1128/jb.182.11.3045-3054.2000	2000
	The Serologic Agglutination of the Obligate Anaerobes Clostridium paraputrificum (Bienstock) and Clostridium capitovalis (Synder and Hall).	Snyder ML.	J Bacteriol	10.1128/jb.32.4.401-410.1936	1936
Enzymology	Identification and characterization of a chitinase antigen from Pseudomonas aeruginosa strain 385.	Thompson SE, Smith M, Wilkinson MC, Peek K.	Appl Environ Microbiol	10.1128/aem.67.9.4001-4008.2001	2001
	Mechanism of the Non-specific Serum Agglutination of the Obligate Anaerobes Clostridium paraputrificum and Clostridium capitovalis.	Snyder ML.	J Bacteriol	10.1128/jb.32.4.411-422.1936	1936
	The Identity of "Bacillus innutritus" (Kleinschmidt) and Bacillus paraputrificus (Bienstock).	Hall IC, Ridgway D.	J Bacteriol	10.1128/jb.34.6.631-638.1937	1937
Genetics	The estrobolome: Estrogen-metabolizing pathways of the gut microbiome and their relation to breast cancer.	Larnder AH, Manges AR, Murphy RA.	Int J Cancer	10.1002/ijc.35427	2025
Metabolism	Glucuronides in the gut: Sugar-driven symbioses between microbe and host.	Pellock SJ, Redinbo MR.	J Biol Chem	10.1074/jbc.r116.767434	2017
Metabolism	Completion of the gut microbial epi-bile acid pathway.	Doden HL, Wolf PG, Gaskins HR, Anantharaman K, Alves JMP, Ridlon JM	Gut Microbes	10.1080/19490976.2021.1907271	2021
Pathogenicity	Growth-Inhibiting and morphostructural effects of constituents identified in Asarum heterotropoides root on human intestinal bacteria.	Perumalsamy H, Jung MY, Hong SM, Ahn YJ	BMC Complement Altern Med	10.1186/1472-6882-13-245	2013

References

#1176	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2630
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#51161	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32755
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium paraputrificum (DSM 2630, ATCC 25780, NCIB 10671)

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