Name: Labrys miyagiensis CIP 109579
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 173181

Type strain:

Species: Labrys miyagiensis

Culture col. no.: CIP 109579, NCIMB 14144, NBRC 101366

Strain history: CIP <- 2007, NCIMB

NCBI tax ID(s): 346912 (species)

Special Collections

Other strains from Labrys miyagiensis

Section

Labrys miyagiensis CIP 109579 is a Gram-negative, oval-shaped bacterium that was isolated from Environment, Soil, grassland.

Gram-negative
oval-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Xanthobacteraceae*
	Genus	*Labrys*
	Species	**Labrys miyagiensis**
	Full Scientific Name (LPSN)	Labrys miyagiensis Islam et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #120982]	Gram stain	negative

[Ref.: #120982]	Cell shape	oval-shaped

[Ref.: #120982]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #120982]

Culture medium

CIP Medium 694

[Ref.: #120982]

Culture medium growth

[Ref.: #120982]

Culture medium link

Medium recipe provided by DSMZ

Information on physiology and metabolism Physiology and metabolism

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120982]		nitrate ChEBI	-	reduction
[Ref.: #120982]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120982]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120982]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120982]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #120982]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120982]	11972	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #120982]	Sample type/isolated from	Environment, Soil, grassland
[Ref.: #120982]	Geographic location (country and/or sea, region)	Sendai, Miyagi
[Ref.: #120982]	Country	Japan
[Ref.: #120982]	Country ISO 3 Code	JPN
[Ref.: #120982]	Continent	Asia
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #120982]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Labrys miyagiensis gene for 16S rRNA, partial sequence, strain: NBRC 101366.	AB681465	1412	GenBank ENA	346912 tax ID	*

Availability in culture collections External links

[Ref.: #120982]

Culture collection no.

CIP 109579, NCIMB 14144, NBRC 101366

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#68382

Automatically annotated from API zym .

#120982 Collection of Institut Pasteur ; Curators of the CIP; CIP 109579

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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