Name: Serpentinimonas barnesii H1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 169733

Type strain:

Species: Serpentinimonas barnesii

Strain Designation: H1

Culture col. no.: DSM 103920, NBRC 111849

Strain history: <- L. Bird, Univ. Southern California; H1 {2016} <- S. Suzuki; H1 <- S. Suzuki, Univ. Southern California; H1 <- G. J. Kuenen, Univ. Delft; {2011}

NCBI tax ID(s): 1458427 (species)

SI-ID 398909

DSM 103920

Special Collections

DSMZ

Section

Serpentinimonas barnesii H1 is a Gram-negative bacterium that was isolated from highly alkaline spring.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Serpentinimonas*
	Species	**Serpentinimonas barnesii**
	Full Scientific Name (LPSN)	Serpentinimonas barnesii Bird et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.968

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69152]

Culture medium

SERPENTINOMONAS MINIMAL MEDIUM (DSMZ Medium 1634)

[Ref.: #69152]

Culture medium growth

[Ref.: #69152]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #69152]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69152]	Sample type/isolated from	highly alkaline spring
[Ref.: #69152]	Geographic location (country and/or sea, region)	CA, Sonoma County, The Cedars, Barnes Springs
[Ref.: #69152]	Country	USA
[Ref.: #69152]	Country ISO 3 Code	USA
[Ref.: #69152]	Continent	North America
[Ref.: #69152]	Geographic location	38.6214°/-123.1330°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Serpentinimonas barnesii H1	GCA_000696225	scaffold	GenBank ENA	1458427 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Serpentinimonas barnesii H1 NCBI: GCA_000696225.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.968	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	85.392	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	59.74	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.883	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	87.704	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.324	no

Availability in culture collections External links

[Ref.: #69152]

Culture collection no.

DSM 103920, NBRC 111849

[Ref.: #115901]

SI-ID 398909

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs.	Bird LJ, Kuenen JG, Osburn MR, Tomioka N, Ishii S, Barr C, Nealson KH, Suzuki S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004945	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69152

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103920

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#115901

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398909.1 )

* These data were automatically processed and therefore are not curated

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