Name: Polaribacter sp. Hel_I_88
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 169665

Type strain:

Species: Polaribacter sp.

Strain Designation: Hel_I_88, Hel1_88

Culture col. no.: DSM 29503

Strain history: <- J. Harder, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; Hel1_88 <- R. Hahnke

SI-ID 401854

DSM 29503

Other strains from Polaribacter sp.

P. sp. Hel1_33_49, DSM 29509 (type strain)
P. sp. W15S19A, DSM 25234, NCIMB 14726
P. sp. JCM 16846
P. sp. JCM 16847
P. sp. Hel_l_85, Hel1_85, DSM 29511
P. sp. R2A056_3_33, DSM 111047
P. sp. HaHaR_3_91, DSM 111048
P. sp. AHE53.11, AHE13PA, DSM 111061

Section

Polaribacter sp. Hel_I_88 is a psychrophilic bacterium that was isolated from seawater sample.

psychrophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Polaribacter*
	Full Scientific Name (LPSN)	Polaribacter Gosink et al. 1998

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #69007]

Caption:

DSM 25903

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #69007]			growth	15 °C

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Temperature range

psychrophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69007]	Sample type/isolated from	seawater sample
[Ref.: #69007]	Geographic location (country and/or sea, region)	Helgoland
[Ref.: #69007]	Country	Germany
[Ref.: #69007]	Country ISO 3 Code	DEU
[Ref.: #69007]	Continent	Europe
[Ref.: #69007]	Geographic location	54.1842°/7.9000°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Polaribacter sp. Hel_I_88	GCA_000687935	contig	GenBank	1250006 tax ID	*
[Ref.: #66792]	Polaribacter sp. Hel_I_88	1250006.5	wgs	PATRIC	1250006 tax ID	*

[Ref.: #69007]

GC-content

30 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Polaribacter sp. Hel_I_88 PATRIC: 1250006.5
[Ref.: #69480]	motile	no	93.279	no
[Ref.: #69480]	gram-positive	no	97.432	no
[Ref.: #69480]	anaerobic	no	99.6	no
[Ref.: #69480]	aerobic	yes	89.067	no
[Ref.: #69480]	halophile	no	79.675	no
[Ref.: #69480]	spore-forming	no	94.845	no
[Ref.: #69480]	thermophile	no	99.064	yes
[Ref.: #69480]	glucose-util	yes	81.49	no
[Ref.: #69480]	flagellated	no	96.04	no
[Ref.: #69480]	glucose-ferment	no	91.899	no

Availability in culture collections External links

[Ref.: #69007]

Culture collection no.

DSM 29503

[Ref.: #115841]

SI-ID 401854

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69007

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29503

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#115841

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401854.1 )

* These data were automatically processed and therefore are not curated

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