Name: Photobacterium ganghwense C2.2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 169571

Type strain:

Species: Photobacterium ganghwense

Strain Designation: C2.2

Culture col. no.: DSM 109767

Strain history: <- I. Mereuta; <- A.-M. Tanase, Univ. Bucharest; C2.2

SI-ID 398629

DSM 109767

Other strains from Photobacterium ganghwense

P. ganghwense FR1311, DSM 22954, IMSNU 60287, ... (type strain)

Section

Photobacterium ganghwense C2.2 is a mesophilic bacterium that was isolated from Seashore sediment.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Photobacterium*
	Species	**Photobacterium ganghwense**
	Full Scientific Name (LPSN)	Photobacterium ganghwense Park et al. 2006

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

DSM 109767 in medium 514f at 20 °C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #68877]			growth	25 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	+	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	yes	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	+	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #68877]	24848	+	+	+	+	-	-	+	+	+	-	-	+	+	+	+	+	-	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68877]	Sample type/isolated from	Seashore sediment
[Ref.: #68877]	Geographic location (country and/or sea, region)	Constanta (44° 05' 1.5 '' N, 28° 38' 36.4'' E)
[Ref.: #68877]	Country	Romania
[Ref.: #68877]	Country ISO 3 Code	ROU
[Ref.: #68877]	Continent	Europe
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Photobacterium ganghwense C2.2	GCA_017329545	complete	GenBank	320778 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Photobacterium ganghwense C2.2 NCBI: GCA_017329545.1
[Ref.: #69480]	flagellated	yes	91.585	no
[Ref.: #69480]	gram-positive	no	98.806	no
[Ref.: #69480]	anaerobic	no	96.396	no
[Ref.: #69480]	aerobic	yes	75.504	no
[Ref.: #69480]	halophile	no	63.363	no
[Ref.: #69480]	spore-forming	no	93.468	no
[Ref.: #69480]	thermophile	no	99.732	no
[Ref.: #69480]	glucose-util	yes	92.983	yes
[Ref.: #69480]	motile	yes	91.616	no
[Ref.: #69480]	glucose-ferment	yes	85.157	yes

Availability in culture collections External links

[Ref.: #68877]

Culture collection no.

DSM 109767

[Ref.: #115767]

SI-ID 398629

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Photobacterium ganghwense C2.2: A new polyhydroxyalkanoate production candidate.	Lascu I, Mereuta I, Chiciudean I, Hansen H, Avramescu SM, Tanase AM, Stoica I	Microbiologyopen	10.1002/mbo3.1182	2021	*
Genetics	Revealing the Phenotypic and Genomic Background for PHA Production from Rapeseed-Biodiesel Crude Glycerol Using Photobacterium ganghwense C2.2.	Lascu I, Tanase AM, Jablonski P, Chiciudean I, Preda MI, Avramescu S, Irgum K, Stoica I	Int J Mol Sci	10.3390/ijms232213754	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68877

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 109767

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#115767

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398629.1 )

* These data were automatically processed and therefore are not curated

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