Methanobacterium alkalithermotolerans (DSM 102889, JCM 31304, CAN)

Name: Methanobacterium alkalithermotolerans (DSM 102889, JCM 31304, CAN)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169508

Type strain

Strain Designation CAN

Culture col. no. DSM 102889 JCM 31304 CAN

NCBI tax ID(s) 2731220

Special Collections JCM DSMZ

History <- M. Quemeneur, Mediterranean Inst. of Oceanography (MIO), Marseille, France; CAN <- M. Quemeneur; {2015}

Links

Methanobacterium alkalithermotolerans CAN is an archaeon that was isolated from alkaline sediment slurry.

genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 400441

JCM 31304,DSM 102889

@ref 20215

Last LPSN update 2026-02-09 11:41:03

Domain Archaea

Phylum Methanobacteriota

Class Methanobacteria

Order Methanobacteriales

Family Methanobacteriaceae

Genus Methanobacterium

Species Methanobacterium alkalithermotolerans

Full scientific name Methanobacterium alkalithermotolerans Mei et al. 2022

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
68802	METHANOBACTERIUM MEDIUM (DSMZ Medium 119)		Medium recipe at MediaDive	Name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119) Composition: NaHCO3 3.98804 g/l Na-formate 1.99402 g/l Na-acetate 0.997009 g/l Na2S x 9 H2O 0.498504 g/l L-Cysteine HCl x H2O 0.498504 g/l KH2PO4 0.498504 g/l NH4Cl 0.398804 g/l NaCl 0.398804 g/l MgSO4 x 7 H2O 0.398804 g/l Yeast extract 0.199402 g/l CaCl2 x 2 H2O 0.0498504 g/l HCl 0.00249252 g/l FeSO4 x 7 H2O 0.00199402 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Isobutyric acid DL-2-Methylbutyric acid Valeric acid Isovaleric acid Distilled water H2SO4 Sludge

Culture temp

@ref	Growth	Type	Temperature (°C)
68802	positive	growth	40

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.567

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
68802	alkaline sediment slurry	New Caledonia, Canala, La Crouen geothermal spring	France	FRA	Europe	-21.5352	165.889 -21.5352/165.889

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1814118v1 assembly for Methanobacterium alkalithermotolerans CAN	complete	GCA_018141185	2731220.3	3001940787	2731220	95.09

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
68802	Methanobacterium alkalithermotolerans strain CAN 16S ribosomal RNA gene, partial sequence	KR349725	1197		2731220

GC content

@ref	GC-content (mol%)	Method
68802	36.4	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Methanobacterium alkalithermotolerans CAN
NCBI: GCA_018141185

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	52.00	no
125439	motility	BacteriaNetⓘ	no	58.00	no
125439	gram_stain	BacteriaNetⓘ	variable	62.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	79.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Methanobacterium alkalithermotolerans CAN
NCBI: GCA_018141185.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	60.12	no
125438	anaerobic	anaerobicⓘ	yes	85.57	no
125438	aerobic	aerobicⓘ	no	83.17	no
125438	spore-forming	spore-formingⓘ	no	90.57	no
125438	thermophilic	thermophileⓘ	no	70.59	no
125438	flagellated	motile2+ⓘ	no	89.38	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanobacterium alkalithermotolerans sp. nov., a novel alkaliphilic and hydrogen-utilizing methanogen isolated from an alkaline geothermal spring (La Crouen, New Caledonia).	Mei N, Postec A, Bartoli M, Vandecasteele C, Wils L, Gil L, Monnin C, Pelletier B, Erauso G, Quemeneur M	Int J Syst Evol Microbiol	10.1099/ijsem.0.005554	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68802	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102889
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Methanobacterium alkalithermotolerans (DSM 102889, JCM 31304, CAN)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_018141185

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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