Name: Mediterraneibacter agrestimuris CLA-SR-176
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 169464

Type strain:

Species: Mediterraneibacter agrestimuris

Strain Designation: CLA-SR-176

Culture col. no.: DSM 111629

Strain history: <- T. Clavel, RWTH Aachen; CLA-SR-176

Section

Mediterraneibacter agrestimuris CLA-SR-176 is a mesophilic bacterium that was isolated from caecal content; female, wild mouse.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Mediterraneibacter*
	Species	"Mediterraneibacter agrestimuris"
	Full Scientific Name (LPSN)	Mediterraneibacter agrestimuris Afrizal et al. 2022

Information on culture and growth conditions Culture and growth conditions

[Ref.: #68747]

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)

[Ref.: #68747]

Culture medium growth

[Ref.: #68747]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #68747]			growth	37 °C

[Ref.: #68747]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68747]	Sample type/isolated from	caecal content; female, wild mouse
[Ref.: #68747]	Geographic location (country and/or sea, region)	Aachen
[Ref.: #68747]	Country	Germany
[Ref.: #68747]	Country ISO 3 Code	DEU
[Ref.: #68747]	Continent	Europe
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mediterraneibacter agrestimuris DSM 111629	GCA_943193195	contig	GenBank	2941333 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mediterraneibacter sp. DSM 111629 Mediterraneibacter_sp_nov_DSM111629 NCBI: GCA_943193195.1
[Ref.: #69480]	flagellated	no	73.447	no
[Ref.: #69480]	gram-positive	yes	91.11	no
[Ref.: #69480]	anaerobic	yes	99.277	no
[Ref.: #69480]	halophile	no	85.443	no
[Ref.: #69480]	spore-forming	yes	51.258	no
[Ref.: #69480]	thermophile	no	88.841	yes
[Ref.: #69480]	glucose-util	yes	91.238	no
[Ref.: #69480]	motile	yes	69.155	no
[Ref.: #69480]	aerobic	no	98.721	no
[Ref.: #69480]	glucose-ferment	yes	76.298	no

Availability in culture collections External links

[Ref.: #68747]

Culture collection no.

DSM 111629

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68747

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111629

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Search for species Mediterraneibacter agrestimuris in external resources:
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Mediterraneibacter sp. DSM 111629 Mediterraneibacter_sp_nov_DSM111629

Change proposal

Change proposal