Achromobacter veterisilvae (LMG 30378, CCUG 71558)

Name: Achromobacter veterisilvae (LMG 30378, CCUG 71558)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 168915

Type strain

Culture col. no. LMG 30378 CCUG 71558

NCBI tax ID(s) 2069367

Special Collections Literature strains CCUG

Links

Achromobacter veterisilvae LMG 30378 is an anaerobe, Gram-negative, motile prokaryote that was isolated from Soil sample with pH 3.5 collected from 10cm depth of a mixed deciduous forest.

Gram-negative motile rod-shaped anaerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 409419

LMG 30378,CCUG 71558

@ref 20215

Last LPSN update 2025-12-16 10:10:27

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter veterisilvae

Full scientific name Achromobacter veterisilvae Dumolin et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
69519	negative	rod-shaped
125439	negative		98.2
125438	negative		96.733

Colony morphology

@ref	Colony size	Incubation period	Medium used
69519	1.0-1.5 mm	2 days	Trypticase Soy Agar (TSA)

Culture and growth conditions

Culture medium

@ref	Name	Growth
69519	Trypticase Soy Agar (TSA)
69519	MacConkey
69519	Drigalski Agar
69519	cetrimide agar

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
69519	positive	growth	4.0-45.0
69519	positive	optimum	28.0-37.0	mesophilic

Culture pH

@ref	Ability	Type	PH
69519	positive	growth	6.0-8.0
69519		growth	4.0-5.0
69519		growth	9

Physiology and metabolism

Oxygen tolerance

69519

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		98.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69519	NaCl	positive	growth	1.0-7.0 %(w/v)
69519	NaCl		growth	8.0-10.0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69519	17128 ChEBI	adipate	+	assimilation
69519	22599 ChEBI	arabinose	-	assimilation
69519		casein	-	hydrolysis
69519	27689 ChEBI	decanoate	+	assimilation
69519	4853 ChEBI	esculin	-	hydrolysis
69519	5291 ChEBI	gelatin	-	hydrolysis
69519	17234 ChEBI	glucose	-	assimilation
69519	17234 ChEBI	glucose	-	fermentation
69519	25115 ChEBI	malate	+	assimilation
69519	17306 ChEBI	maltose	-	assimilation
69519	29864 ChEBI	mannitol	-	assimilation
69519	37684 ChEBI	mannose	-	assimilation
69519	506227 ChEBI	N-acetylglucosamine	-	assimilation
69519	17632 ChEBI	nitrate	+	reduction
69519	18401 ChEBI	phenylacetate	+	assimilation
69519	32032 ChEBI	potassium gluconate	-	assimilation
69519	53258 ChEBI	sodium citrate	+	assimilation
69519	28017 ChEBI	starch	-	hydrolysis
69519	53424 ChEBI	tween 20	-	hydrolysis
69519	53423 ChEBI	tween 40	-	hydrolysis
69519	53425 ChEBI	tween 60	-	hydrolysis
69519	53426 ChEBI	tween 80	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
69519	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
69519	acid phosphatase	+	3.1.3.2
69519	alkaline phosphatase	-	3.1.3.1
69519	alpha-fucosidase	-	3.2.1.51
69519	alpha-galactosidase	-	3.2.1.22
69519	alpha-glucosidase	-	3.2.1.20
69519	alpha-mannosidase	-	3.2.1.24
69519	arginine dihydrolase	-	3.5.3.6
69519	beta-galactosidase	-	3.2.1.23
69519	beta-glucosidase	-	3.2.1.21
69519	beta-glucuronidase	-	3.2.1.31
69519	catalase	+	1.11.1.6
69519	chymotrypsin	-	3.4.4.5
69519	cystine arylamidase	-	3.4.11.3
69519	cytochrome oxidase	+	1.9.3.1
69519	DNase	+
69519	esterase (C 4)	-
69519	esterase Lipase (C 8)	-
69519	leucyl glycin arylamidase	+	3.4.11.1
69519	lipase (C 14)	-
69519	N-acetyl-beta-glucosaminidase	-	3.2.1.52
69519	phosphoamidase	-	3.9.1.1
69519	trypsin	-	3.4.21.4
69519	urease	-	3.5.1.5
69519	valine arylamidase	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Isolation procedure
69519	Soil sample with pH 3.5 collected from 10cm depth of a mixed deciduous forest	2015	Almoeseneie forest, Gontrode	Belgium	BEL	Europe	50.9667	3.81667 50.9667/3.81667	mineral medium in batch reactor	enrichment in batch reactor and serial dilution for isolation

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	LMG 30378 assembly for Achromobacter veterisilvae LMG 30378	contig	GCA_900496975	2069367.3	2882065909	2069367	55.35

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Achromobacter sp. LMG 30378 partial 16S rRNA gene, strain LMG 30378	LT976503	1483		2069367

GC content

@ref	GC-content (mol%)	Method
69519	67.2	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Achromobacter veterisilvae LMG 30378
NCBI: GCA_900496975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	yes	83.90	no
125439	gram_stain	BacteriaNetⓘ	negative	98.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	83.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter sp. LMG 30378
PATRIC: 2069367.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.73	no
125438	anaerobic	anaerobicⓘ	no	85.86	yes
125438	spore-forming	spore-formingⓘ	no	88.06	no
125438	aerobic	aerobicⓘ	yes	74.12	yes
125438	thermophilic	thermophileⓘ	no	98.49	no
125438	flagellated	motile2+ⓘ	yes	86.28	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Decoding emergent properties of microbial community functions through subcommunity observations and interpretable machine learning.	Ishizawa H, Noguchi S, Kito M, Nomura Y, Kimura K, Takeo M.	ISME J	10.1093/ismejo/wraf236	2025
	Gut bacterial type III secretion systems aggravate colitis in mice and serve as biomarkers of Crohn's disease.	Xu J, Li P, Li Z, Liu S, Guo H, Lesser CF, Ke J, Zhao W, Mou X.	EBioMedicine	10.1016/j.ebiom.2024.105296	2024
Phylogeny	Duplex real-time PCR assay for the simultaneous detection of Achromobacter xylosoxidans and Achromobacter spp.	Price EP, Soler Arango V, Kidd TJ, Fraser TA, Nguyen TK, Bell SC, Sarovich DS.	Microb Genom	10.1099/mgen.0.000406	2020
Phylogeny	Achromobacter veterisilvae sp. nov., from a mixed hydrogen-oxidizing bacteria enrichment reactor for microbial protein production.	Dumolin C, Peeters C, Ehsani E, Tahon G, De Canck E, Cnockaert M, Boon N, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003786	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69519	Charles Dumolin, Charlotte Peeters, Elham Ehsani, Guillaume Tahon, Evelien De Canck, Margo Cnockaert, Nico Boon, Peter Vandamme: Achromobacter veterisilvae sp. nov., from a mixed hydrogen-oxidizing bacteria enrichment reactor for microbial protein production. IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003786 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Achromobacter veterisilvae (LMG 30378, CCUG 71558)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900496975

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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