Name: Aequorivita soesokkakensis RSSK-12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 168696

Type strain:

Species: Aequorivita soesokkakensis

Strain Designation: RSSK-12

Culture col. no.: KCTC 32536, CECT 8398

NCBI tax ID(s): 1385699 (species)

SI-ID 392221

KCTC 32536, CECT 8398

Section

Aequorivita soesokkakensis RSSK-12 is a bacterium of the family Flavobacteriaceae.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Aequorivita*
	Species	**Aequorivita soesokkakensis**
	Full Scientific Name (LPSN)	Aequorivita soesokkakensis (Park et al. 2014) Hahnke et al. 2017

Synonym

Vitellibacter soesokkakensis

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence KF437680 (>99% sequence identity) for Aequorivita soesokkakensis subclade from Microbeatlas

Aquatic Samples	73
Soil Samples	24
Animal Samples	22
Plant Samples	3
Total Samples	122

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20215]

Biosafety level

Risk group

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Vitellibacter soesokkakensis strain RSSK-12 16S ribosomal RNA gene, partial sequence	KF437680	1446	ENA	1385699 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aequorivita soesokkakensis RSSK-12	GCA_001641085	contig	GenBank	1385699 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aequorivita soesokkakensis RSSK-12 NCBI: GCA_001641085.1
[Ref.: #69480]	flagellated	no	96.122	no
[Ref.: #69480]	gram-positive	no	98.753	no
[Ref.: #69480]	anaerobic	no	99.022	no
[Ref.: #69480]	aerobic	yes	90.014	no
[Ref.: #69480]	halophile	yes	54.263	no
[Ref.: #69480]	spore-forming	no	95.51	no
[Ref.: #69480]	glucose-util	yes	77.987	no
[Ref.: #69480]	motile	no	87.189	no
[Ref.: #69480]	thermophile	no	98.917	no
[Ref.: #69480]	glucose-ferment	no	91.27	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

KCTC 32536, CECT 8398

[Ref.: #115238]

SI-ID 392221

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vitellibacter echinoideorum sp. nov., isolated from a sea urchin (Tripneustes gratilla).	Lin SY, Hameed A, Wen CZ, Liu YC, Hsu YH, Shen FT, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.000258	2015	*
Phylogeny	Aegicerativicinus sediminis gen. nov., sp. nov., a novel carotenoid-producing marine bacterium in the family Flavobacteriaceae.	Huang Z, Guo Y, Xiao Q, Liu X, Lai Q	Antonie Van Leeuwenhoek	10.1007/s10482-021-01621-8	2021	*
Phylogeny	Vitellibacter nionensis sp. nov., isolated from a shallow water hydrothermal vent.	Rajasabapathy R, Mohandass C, Yoon JH, Dastager SG, Liu Q, Khieu TN, Son CK, Li WJ, Colaco A	Int J Syst Evol Microbiol	10.1099/ijs.0.070805-0	2014	*
Phylogeny	Vitellibacter soesokkakensis sp. nov., isolated from the junction between the ocean and a freshwater spring and emended description of the genus Vitellibacter.	Park S, Lee KC, Bae KS, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.056713-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#115238

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID392221.1 )

* These data were automatically processed and therefore are not curated

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