Anaerocolumna chitinilytica (DSM 110036, NBRC 112102, CTTW)

Name: Anaerocolumna chitinilytica (DSM 110036, NBRC 112102, CTTW)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 168001

Type strain

Strain Designation CTTW

Culture col. no. DSM 110036 NBRC 112102 CTTW

NCBI tax ID(s) 1727145

Special Collections DSMZ

History <- A. Ueki, Yamagata Univ., Tsuruoka, Japan; CTTW <- A. Ueki; {2010}

Links

Anaerocolumna chitinilytica CTTW is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402804

NBRC 112102,DSM 110036

@ref 20215

Last LPSN update 2026-02-09 11:40:42

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Anaerocolumna

Species Anaerocolumna chitinilytica

Full scientific name Anaerocolumna chitinilytica Ueki et al. 2021

Morphology

Cell morphology

@ref	Motility	Confidence
125439		90.9

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
124558	PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)		Medium recipe at MediaDive	Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
124558	positive	growth	35

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	96.1

Spore formation

@ref	Spore formation	Confidence
125439		96.1

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
124558	soil	Tokushima	Japan	JPN	Asia	34.07	134.36 34.07/134.36

Taxonmaps

69479

Global distribution of 16S sequence LC020489 (>99% sequence identity) for Anaerocolumna from Microbeatlas

Aquatic Samples	102
Soil Samples	127
Animal Samples	109
Plant Samples	26
Total Samples	364

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1421835v1 assembly for Anaerocolumna chitinilytica CTTW	complete	GCA_014218355	1727145.3	2910379238	1727145	93.83

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Anaerocolumna chitinilytica CTTW gene for 16S ribosomal RNA, partial sequence	LC020489	1459		1727145

GC content

@ref	GC-content (mol%)	Method
124558	38.3	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Anaerocolumna chitinilytica CTTW
NCBI: GCA_014218355

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	96.10	no
125439	motility	BacteriaNetⓘ	yes	90.90	no
125439	gram_stain	BacteriaNetⓘ	variable	69.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	96.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Anaerocolumna chitinilytica CTTW
NCBI: GCA_014218355.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	66.75	no
125438	anaerobic	anaerobicⓘ	yes	84.50	no
125438	aerobic	aerobicⓘ	no	90.22	no
125438	spore-forming	spore-formingⓘ	yes	73.40	no
125438	thermophilic	thermophileⓘ	no	93.49	no
125438	flagellated	motile2+ⓘ	yes	80.16	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Anaerocolumna chitinilytica sp. nov., a chitin-decomposing anaerobic bacterium isolated from anoxic soil subjected to biological soil disinfestation.	Ueki A, Tonouchi A, Kaku N, Ueki K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004999	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124558	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110036
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Anaerocolumna chitinilytica (DSM 110036, NBRC 112102, CTTW)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014218355

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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