Geomonas terrae (NBRC 114026, MCCC 1K04029, Red111)

Name: Geomonas terrae (NBRC 114026, MCCC 1K04029, Red111)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 167684

Type strain

Strain Designation Red111

Culture col. no. NBRC 114026 MCCC 1K04029 Red111

NCBI tax ID(s) 2562681

Links

Geomonas terrae Red111 is a prokaryote of the family Geobacteraceae.

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 393833

NBRC 114026

@ref 20215

Last LPSN update 2026-02-09 11:40:38

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Desulfuromonadia

Order Geobacterales

Family Geobacteraceae

Genus Geomonas

Species Geomonas terrae

Full scientific name Geomonas terrae Xu et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.327
125439	negative	98.5

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	98.7

Spore formation

@ref	Spore formation	Confidence
125439		98.7

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM479167v1 assembly for Geomonas terrae Red111	scaffold	GCA_004791675	2562681.3	2887658908	2562681	76.05

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Geomonas terrae strain Red111 16S ribosomal RNA gene, partial sequence	MH915556	1426		2562681

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Geomonas terrae Red111
NCBI: GCA_004791675

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	yes	56.10	no
125439	gram_stain	BacteriaNetⓘ	negative	98.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	98.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Geomonas terrae Red111
NCBI: GCA_004791675.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.33	no
125438	anaerobic	anaerobicⓘ	yes	70.09	no
125438	aerobic	aerobicⓘ	no	76.50	no
125438	spore-forming	spore-formingⓘ	no	79.36	no
125438	thermophilic	thermophileⓘ	no	91.70	no
125438	flagellated	motile2+ⓘ	yes	70.64	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome Analysis and Description of Three Novel Diazotrophs Geomonas Species Isolated From Paddy Soils.	Liu GH, Yang S, Tang R, Xie CJ, Zhou SG	Front Microbiol	10.3389/fmicb.2021.801462	2022
Phylogeny	Geomonas oryzae gen. nov., sp. nov., Geomonas edaphica sp. nov., Geomonas ferrireducens sp. nov., Geomonas terrae sp. nov., Four Ferric-Reducing Bacteria Isolated From Paddy Soil, and Reclassification of Three Species of the Genus Geobacter as Members of the Genus Geomonas gen. nov.	Xu Z, Masuda Y, Itoh H, Ushijima N, Shiratori Y, Senoo K	Front Microbiol	10.3389/fmicb.2019.02201	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Geomonas terrae (NBRC 114026, MCCC 1K04029, Red111)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004791675

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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