Name: Francisella opportunistica PA05-1188
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 167644

Type strain:

Species: Francisella opportunistica

Strain Designation: PA05-1188

Culture col. no.: ATCC BAA-2974, DSM 107100

Strain history: <- E. Dietrich, Centers for Disease Control and Prevention Divisionof Vector-Borne Diseases; PA05-1188

NCBI tax ID(s): 2016517 (species)

SI-ID 402785

DSM 107100

Special Collections

DSMZ

Section

Francisella opportunistica PA05-1188 is a bacterium of the family Francisellaceae.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Francisellaceae*
	Genus	*Francisella*
	Species	**Francisella opportunistica**
	Full Scientific Name (LPSN)	Francisella opportunistica Dietrich et al. 2020

Synonym

"Francisella opportunistica"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #68462]

Culture medium

COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c)

[Ref.: #68462]

Culture medium growth

[Ref.: #68462]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #68462]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %93.268

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence EU031811 (>99% sequence identity) for Francisella from Microbeatlas

Aquatic Samples	144
Soil Samples	17
Animal Samples	40
Plant Samples	17
Total Samples	218

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68462]	Francisella opportunistica strain PA05-1188 chromosome, complete genome	CP022377	1839233	GenBank ENA	2016517 tax ID
[Ref.: #20215]	Francisella sp. PA051188 16S ribosomal RNA gene, partial sequence	EU031811	1265	GenBank ENA	2016517 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Francisella opportunistica VA14-2155	GCA_003347135	complete	GenBank ENA	2016517 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Francisella opportunistica PA05-1188 NCBI: GCA_003347135.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	90.802	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	55.651	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.268	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.08	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.432	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

ATCC BAA-2974, DSM 107100

[Ref.: #114993]

SI-ID 402785

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Francisella opportunistica sp. nov., isolated from human blood and cerebrospinal fluid.	Dietrich EA, Kingry LC, Kugeler KJ, Levy C, Yaglom H, Young JW, Mead PS, Petersen JM	Int J Syst Evol Microbiol	10.1099/ijsem.0.003891	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68462

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107100

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114993

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402785.1 )

* These data were automatically processed and therefore are not curated

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