Acholeplasma oculi 19L ATCC 27350 is an animal pathogen of the family Acholeplasmataceae.
animal pathogen genome sequence 16S sequence| @ref 20215 |
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| Domain Bacillati |
| Phylum Mycoplasmatota |
| Class Mollicutes |
| Order Acholeplasmatales |
| Family Acholeplasmataceae |
| Genus Acholeplasma |
| Species Acholeplasma oculi |
| Full scientific name Acholeplasma oculi corrig. Al-Aubaidi et al. 1973 (Approved Lists 1980) |
| Synonyms (1) |
| BacDive ID | Other strains from Acholeplasma oculi (2) | Type strain |
|---|---|---|
| 175196 | A. oculi Panangala 59, DSM 116314 | |
| 175197 | A. oculi Panangala 77, DSM 116315 |
| @ref | Motility | Confidence | |
|---|---|---|---|
| 125438 | 92.5 |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 95.5 |
Global distribution of 16S sequence U14904 (>99% sequence identity) for Acholeplasma from Microbeatlas ![]()
| @ref | Pathogenicity animal | Biosafety level | Biosafety level comment | |
|---|---|---|---|---|
| 20215 | 2 | Risk group |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | 57752_G01 assembly for Acholeplasma oculi NCTC10150 | contig | 35623 | 77.97 | ||||
| 66792 | IMG-taxon 2585428188 annotated assembly for Acholeplasma oculi ATCC 27350 | scaffold | 35623 | 76.75 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20215 | Acholeplasma oculi 19L ATCC 27350 16S ribosomal RNA gene, partial sequence | U14904 | 1490 | 35623 | ||
| 124043 | Acholeplasma oculi 16S/23S rRNA spacer region 1, tRNA-Ile and tRNA-Ala genes, complete sequence. | AF005321 | 356 | 35623 | ||
| 124043 | Acholeplasma oculi 16S/23S rRNA spacer region 2, complete sequence | AF005322 | 189 | 35623 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 52.00 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 61.30 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 71.20 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 95.50 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 63.97 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 72.31 | no |
| 125438 | aerobic | aerobicⓘ | no | 92.27 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 81.40 | no |
| 125438 | thermophilic | thermophileⓘ | no | 94.91 | no |
| 125438 | flagellated | motile2+ⓘ | no | 92.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Enzymology | Comparison of multiplex PCR assay with culture for detection of genital mycoplasmas. | Stellrecht KA, Woron AM, Mishrik NG, Venezia RA. | J Clin Microbiol | 10.1128/jcm.42.4.1528-1533.2004 | 2004 | |
| Phylogeny | Detection and characterization of human Ureaplasma species and serovars by real-time PCR. | Xiao L, Glass JI, Paralanov V, Yooseph S, Cassell GH, Duffy LB, Waites KB. | J Clin Microbiol | 10.1128/jcm.01877-09 | 2010 | |
| Topical fluoride varnish application shifts dysbiotic dental plaque microbiome towards eubiosis in children with dental caries. | Sari Widyarman A, Udawatte NS, Tegar Badruzzaman I, Cloudya Panjaitan C, Apriani A, Jeddy, Erri Astoeti T, Jayampath Seneviratne C. | Saudi Dent J | 10.1016/j.sdentj.2024.07.010 | 2024 | ||
| Validation of a mycoplasma molecular diagnostic test and distribution of mycoplasma species in bovine milk among New York State dairy farms. | Gioia G, Werner B, Nydam DV, Moroni P. | J Dairy Sci | 10.3168/jds.2015-10724 | 2016 | ||
| Assembling bacterial puzzles: piecing together functions into microbial pathways. | Chung HC, Friedberg I, Bromberg Y. | NAR Genom Bioinform | 10.1093/nargab/lqae109 | 2024 | ||
| Enzymology | Mycoplasma detection and isolation from one-humped camels (Camelus dromedarius). | Mederos-Iriarte LE, Poveda JB, Poveda CG, Vega-Orellana OM, Gutierrez C, Corbera JA, Ramirez AS. | Trop Anim Health Prod | 10.1007/s11250-014-0639-9 | 2014 | |
| Genetics | Complete genome determination and analysis of Acholeplasma oculi strain 19L, highlighting the loss of basic genetic features in the Acholeplasmataceae. | Siewert C, Hess WR, Duduk B, Huettel B, Reinhardt R, Buttner C, Kube M. | BMC Genomics | 10.1186/1471-2164-15-931 | 2014 | |
| Phylogeny | Reclassification of Mesoplasma pleciae as Acholeplasma pleciae comb. nov. on the basis of 16S rRNA and gyrB gene sequence data. | Knight TF. | Int J Syst Evol Microbiol | 10.1099/ijs.0.02904-0 | 2004 | |
| Enzymology | Virulence, antimicrobial resistance and phylogenetic analysis of zoonotic walking pneumonia Mycoplasma arginini in the one-humped camel (Camelus dromedarius). | Abdelazeem WM, Zolnikov TR, Mohammed ZR, Saad A, Osman KM. | Acta Trop | 10.1016/j.actatropica.2020.105500 | 2020 | |
| Phylogeny | Phylogenetic analysis of mycoplasma strain ISM1499 and its assignment to the Acholeplasma oculi strain cluster. | Artiushin S, Duvall M, Minion FC. | Int J Syst Bacteriol | 10.1099/00207713-45-1-104 | 1995 | |
| Clinical and ultrasonographic findings of some ocular conditions in sheep and goats. | El-Tookhy O, Tharwat M. | Open Vet J | 2013 | |||
| Transformation of Mollicutes with single-stranded Tn4001 DNA. | Kapke PA, Knudtson KL, Minion FC. | Plasmid | 10.1006/plas.1994.1048 | 1994 | ||
| Expression of foreign genes and selection of promoter sequences in Acholeplasma laidlawii. | Jarhede TK, Le Henaff M, Wieslander A. | Microbiology (Reading) | 10.1099/13500872-141-9-2071 | 1995 | ||
| Metabolism | Comparative metabolism of Mesoplasma, Entomoplasma, Mycoplasma, and Acholeplasma. | Pollack JD, Williams MV, Banzon J, Jones MA, Harvey L, Tully JG. | Int J Syst Bacteriol | 10.1099/00207713-46-4-885 | 1996 | |
| Enzymology | Characterization of a mycoplasma virus (MV-O1) derived from and infecting Acholeplasma oculi. | Ogawa HI, Nakamura M. | J Gen Microbiol | 10.1099/00221287-131-11-3117 | 1985 | |
| Metabolism | [Generation of pro-coagulation activity by leukocytes stimulated in vitro with lipoglycans from mycoplasmas]. | Monno RA, Barone G, Fumarola D, Miragliotta G. | G Batteriol Virol Immunol | 1985 | ||
| Pathogenicity | Nisin resistance distinguishes Mycoplasma spp. from Acholeplasma spp. and provides a basis for selective growth media. | Abu-Amero KK, Halablab MA, Miles RJ. | Appl Environ Microbiol | 10.1128/aem.62.9.3107-3111.1996 | 1996 | |
| Genetics | Physical map of the genome of Acholeplasma oculi ISM1499 and construction of a Tn4001 derivative for macrorestriction chromosomal mapping. | Tigges E, Minion FC. | J Bacteriol | 10.1128/jb.176.4.1180-1183.1994 | 1994 | |
| A review of mycoplasma diagnostics in cattle. | Parker AM, Sheehy PA, Hazelton MS, Bosward KL, House JK. | J Vet Intern Med | 10.1111/jvim.15135 | 2018 | ||
| DNA cleavage patterns as indicators of genotypic heterogeneity among strains of Acholeplasma and Mycoplasma species. | Razin S, Tully JG, Rose DL, Barile MF. | J Gen Microbiol | 10.1099/00221287-129-6-1935 | 1983 | ||
| Keratoconjunctivitis infectiosa ovis (KIO), 'pink eye' or 'zere oogjes' (a survey). | Konig CD. | Vet Q | 10.1080/01652176.1983.9693886 | 1983 | ||
| Use of lac gene fusions in the analysis of Acholeplasma upstream gene regulatory sequences. | Knudtson KL, Minion FC. | J Bacteriol | 10.1128/jb.176.9.2763-2766.1994 | 1994 | ||
| Receptor sites for mycoplasmal viruses on Acholeplasma laidlawii. | Al-Shammari AJ, Smith PF. | Rev Infect Dis | 10.1093/clinids/4.supplement_1.s109 | 1982 | ||
| Enzymology | Biological properties of a plaque-inducing agent obtained from Acholeplasma oculi. | Ichimaru H, Nakamura M. | Yale J Biol Med | 1983 | ||
| Bacteriological investigation of infectious keratoconjunctivitis in Norwegian sheep. | Akerstedt J, Hofshagen M. | Acta Vet Scand | 10.1186/1751-0147-45-19 | 2004 | ||
| Lipid and lipopolysaccharide composition of Acholeplasma oculi. | Al-Shammari AJ, Smith PF. | J Bacteriol | 10.1128/jb.139.2.356-361.1979 | 1979 | ||
| Metabolism | Interaction of mycoplasma virus type 2 with cellular components of Acholeplasma laidlawii strain JA1. | Al-Shammari AJ, Smith PF. | J Virol | 10.1128/jvi.36.1.120-124.1980 | 1980 | |
| Respiration-associated components of Mollicutes. | Pollack JD, Merola AJ, Platz M, Booth RL. | J Bacteriol | 10.1128/jb.146.3.907-913.1981 | 1981 | ||
| Endotoxin-like activities of mycoplasmal lipopolysaccharides (lipoglycans). | Seid RC, Smith PF, Guevarra G, Hochstein HD, Barile MF. | Infect Immun | 10.1128/iai.29.3.990-994.1980 | 1980 | ||
| Genetics | Identification of the origin of replication of the Mycoplasma pulmonis chromosome and its use in oriC replicative plasmids. | Cordova CM, Lartigue C, Sirand-Pugnet P, Renaudin J, Cunha RA, Blanchard A. | J Bacteriol | 10.1128/jb.184.19.5426-5435.2002 | 2002 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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