Name: Bradyrhizobium tropiciagri SEMIA 6148
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 167565

Type strain:

Species: Bradyrhizobium tropiciagri

Strain Designation: SEMIA 6148, SMS 303

Culture col. no.: LMG 28867, CNPSo 1112, BR 1009

NCBI tax ID(s): 312253 (species)

SI-ID 396477

LMG 28867

Section

Bradyrhizobium tropiciagri SEMIA 6148 is a bacterium of the family Nitrobacteraceae.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Nitrobacteraceae*
	Genus	*Bradyrhizobium*
	Species	**Bradyrhizobium tropiciagri**
	Full Scientific Name (LPSN)	Bradyrhizobium tropiciagri Delamuta et al. 2015

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AY904753 (>99% sequence identity) for Bradyrhizobium from Microbeatlas

Aquatic Samples	4833
Soil Samples	14338
Animal Samples	6732
Plant Samples	3278
Total Samples	29181

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20215]

Biosafety level

Risk group

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Bradyrhizobium tropiciagri strain SEMIA 6148 16S ribosomal RNA gene, partial sequence	AY904753	1450	ENA	312253 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bradyrhizobium tropiciagri SEMIA 6148	GCA_001189845	contig	GenBank	312253 tax ID	*
[Ref.: #66792]	Bradyrhizobium sp. SEMIA 6148	312253.4	wgs	PATRIC	312253 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bradyrhizobium sp. SEMIA 6148 PATRIC: 312253.4
[Ref.: #69480]	gram-positive	no	97.994	no
[Ref.: #69480]	anaerobic	no	97.717	no
[Ref.: #69480]	halophile	no	94.762	no
[Ref.: #69480]	spore-forming	no	92.743	no
[Ref.: #69480]	glucose-util	yes	88.337	no
[Ref.: #69480]	motile	yes	86.145	no
[Ref.: #69480]	flagellated	no	66.878	no
[Ref.: #69480]	aerobic	yes	91.118	no
[Ref.: #69480]	thermophile	no	99.5	no
[Ref.: #69480]	glucose-ferment	no	89.842	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

LMG 28867, CNPSo 1112, BR 1009

[Ref.: #114972]

SI-ID 396477

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bradyrhizobium tropiciagri sp. nov. and Bradyrhizobium embrapense sp. nov., nitrogen-fixing symbionts of tropical forage legumes.	Delamuta JRM, Ribeiro RA, Ormeno-Orrillo E, Parma MM, Melo IS, Martinez-Romero E, Hungria M	Int J Syst Evol Microbiol	10.1099/ijsem.0.000592	2015	*
Genetics	Genome Sequence of Bradyrhizobium tropiciagri Strain CNPSo 1112T, Isolated from a Root Nodule of Neonotonia wightii.	Delamuta JR, Gomes DF, Ribeiro RA, Chueire LM, Souza RC, Almeida LG, Vasconcelos AT, Hungria M	Genome Announc	10.1128/genomeA.01482-15	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114972

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396477.1 )

* These data were automatically processed and therefore are not curated

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Bradyrhizobium sp. SEMIA 6148

Change proposal

Change proposal