Name: Paenibacillus ferrarius CY1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 167467

Type strain:

Species: Paenibacillus ferrarius

Strain Designation: CY1

Culture col. no.: KCTC 33419, CCTCC AB 2013369

NCBI tax ID(s): 1469647 (species)

Section

Paenibacillus ferrarius CY1 is a bacterium of the family Paenibacillaceae.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus ferrarius**
	Full Scientific Name (LPSN)	Paenibacillus ferrarius Cao et al. 2015

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence KF925453 (>99% sequence identity) for Paenibacillus ferrarius subclade from Microbeatlas

Aquatic Samples	3
Soil Samples	32
Animal Samples	6
Plant Samples
Total Samples	41

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20215]

Biosafety level

Risk group

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Paenibacillus ferrarius strain CY1 16S ribosomal RNA gene, partial sequence	KF925453	1505	ENA	1469647 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus ferrarius CY1	GCA_002027705	scaffold	GenBank	1469647 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus ferrarius CY1 NCBI: GCA_002027705.1
[Ref.: #69480]	flagellated	yes	81.987	no
[Ref.: #69480]	gram-positive	yes	78.58	no
[Ref.: #69480]	anaerobic	no	99.179	no
[Ref.: #69480]	aerobic	yes	82.325	no
[Ref.: #69480]	halophile	no	94.713	no
[Ref.: #69480]	spore-forming	yes	93.648	no
[Ref.: #69480]	glucose-util	yes	90.005	no
[Ref.: #69480]	thermophile	no	99.911	no
[Ref.: #69480]	motile	yes	86.613	no
[Ref.: #69480]	glucose-ferment	no	88.978	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

KCTC 33419, CCTCC AB 2013369

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus qinlingensis sp. nov., an indole-3-acetic acid-producing bacterium isolated from roots of Sinopodophyllum hexandrum (Royle) Ying.	Xin K, Li M, Chen C, Yang X, Li Q, Cheng J, Zhang L, Shen X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001666	2017	*
Phylogeny	Paenibacillus ferrarius sp. nov., isolated from iron mineral soil.	Cao Y, Chen F, Li Y, Wei S, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.063552-0	2014	*
	High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination.	Li J, Guo W, Shi M, Cao Y, Wang G	Stand Genomic Sci	10.1186/s40793-017-0273-z	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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