Name: Sphingomonas pokkalii L3B27
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 167380

Type strain:

Species: Sphingomonas pokkalii

Strain Designation: L3B27

Culture col. no.: LMG 28266, KCTC 42098, MCC 3001

NCBI tax ID(s): 2175090 (species)

Section

Sphingomonas pokkalii L3B27 is a bacterium of the family Sphingomonadaceae.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas pokkalii**
	Full Scientific Name (LPSN)	Sphingomonas pokkalii Menon et al. 2021

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence MH251639 (>99% sequence identity) for Sphingomonas from Microbeatlas

Aquatic Samples	46
Soil Samples	19
Animal Samples	9
Plant Samples	19
Total Samples	93

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Sphingomonas pokkalii strain L3B27 16S ribosomal RNA gene, partial sequence	MH251639	1433	ENA	2175090 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingomonas pokkalii L3B27	GCA_003096275	scaffold	GenBank	2175090 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingomonas pokkalii L3B27 NCBI: GCA_003096275.1
[Ref.: #69480]	flagellated	no	92.973	no
[Ref.: #69480]	gram-positive	no	97.214	no
[Ref.: #69480]	anaerobic	no	99.062	no
[Ref.: #69480]	halophile	no	94.043	no
[Ref.: #69480]	spore-forming	no	93.499	no
[Ref.: #69480]	glucose-util	yes	91.886	no
[Ref.: #69480]	aerobic	yes	93.094	no
[Ref.: #69480]	motile	yes	63.168	no
[Ref.: #69480]	glucose-ferment	no	91.772	no
[Ref.: #69480]	thermophile	no	95.805	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

LMG 28266, KCTC 42098, MCC 3001

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas pokkalii sp. nov., a novel plant associated rhizobacterium isolated from a saline tolerant pokkali rice and its draft genome analysis.	Menon RR, Kumari S, Kumar P, Verma A, Krishnamurthi S, Rameshkumar N	Syst Appl Microbiol	10.1016/j.syapm.2019.02.003	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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