Name: Bifidobacterium choloepi BRDM 6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 167253

Type strain:

Species: Bifidobacterium choloepi

Strain Designation: BRDM 6

Culture col. no.: BCRC 81222, NBRC 114053

NCBI tax ID(s): 2614131 (species)

Bifidobacterium choloepi BRDM 6 is a bacterium of the family Bifidobacteriaceae.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium choloepi**
	Full Scientific Name (LPSN)	Bifidobacterium choloepi Modesto et al. 2020

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Bifidobacterium choloepi strain BRDM 6 16S ribosomal RNA gene, partial sequence	MN482706	1529	ENA	2614131 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bifidobacterium choloepi BRDM 6	GCA_010667615	scaffold	GenBank	2614131 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium choloepi BRDM 6 NCBI: GCA_010667615.1
[Ref.: #69480]	motile	no	94.983	no
[Ref.: #69480]	flagellated	no	97.458	no
[Ref.: #69480]	gram-positive	yes	91.192	no
[Ref.: #69480]	anaerobic	yes	96.896	no
[Ref.: #69480]	aerobic	no	97.08	no
[Ref.: #69480]	halophile	no	68.389	no
[Ref.: #69480]	spore-forming	no	96.83	no
[Ref.: #69480]	glucose-util	yes	90.592	no
[Ref.: #69480]	thermophile	no	95.128	no
[Ref.: #69480]	glucose-ferment	yes	84.831	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

BCRC 81222, NBRC 114053

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bifidobacteria in two-toed sloths (Choloepus didactylus): phylogenetic characterization of the novel taxon Bifidobacterium choloepi sp. nov.	Modesto M, Satti M, Watanabe K, Huang CH, Liou JS, Tamura T, Saito S, Mori K, Huang L, Sandri C, Spiezio C, Sgorbati B, Scarafile D, Camma C, Ancora M, Patavino C, Arita M, Mattarelli P	Int J Syst Evol Microbiol	10.1099/ijsem.0.004506	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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