Name: Sphingomonas sinipercae HDW15C
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166641

Type strain:

Species: Sphingomonas sinipercae

Strain Designation: HDW15C

Culture col. no.: KCTC 72589, KACC 21342, JCM 33739

NCBI tax ID(s): 2714944 (species)

Sphingomonas sinipercae HDW15C is a bacterium of the family Sphingomonadaceae.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas sinipercae**
	Full Scientific Name (LPSN)	Sphingomonas sinipercae Hyun et al. 2022

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Sphingomonas sinipercae strain HDW15C 16S ribosomal RNA gene, partial sequence	MN099417	1409	ENA	2714944 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingomonas sinipercae HDW15C	GCA_011302055	complete	GenBank	2714944 tax ID	*
[Ref.: #66792]	Sphingomonas sp. HDW15C	2714944.3	complete	PATRIC	2714944 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingomonas sinipercae HDW15C NCBI: GCA_011302055.1
[Ref.: #69480]	motile	no	80.982	no
[Ref.: #69480]	flagellated	no	96.307	no
[Ref.: #69480]	gram-positive	no	97.896	no
[Ref.: #69480]	anaerobic	no	99.037	no
[Ref.: #69480]	aerobic	yes	83.43	no
[Ref.: #69480]	halophile	no	92.312	no
[Ref.: #69480]	spore-forming	no	94.938	no
[Ref.: #69480]	thermophile	no	89.38	no
[Ref.: #69480]	glucose-util	yes	72.64	no
[Ref.: #69480]	glucose-ferment	no	89.683	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

KCTC 72589, KACC 21342, JCM 33739

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Nocardioides piscis sp. nov., Sphingomonas piscis sp. nov. and Sphingomonas sinipercae sp. nov., isolated from the intestine of fish species Odontobutis interrupta (Korean spotted sleeper) and Siniperca scherzeri (leopard mandarin fish).	Hyun DW, Jeong YS, Lee JY, Sung H, Lee SY, Choi JW, Kim HS, Kim PS, Bae JW	J Microbiol	10.1007/s12275-021-1036-5	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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