Name: Alteromonas sediminis U0105
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166518

Type strain:

Species: Alteromonas sediminis

Strain Designation: U0105

Culture col. no.: KCTC 62080, MCCC 1H00299

NCBI tax ID(s): 2259342 (species)

Section

Alteromonas sediminis U0105 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from sediment of a sea cucumber culture pond.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Alteromonas*
	Species	**Alteromonas sediminis**
	Full Scientific Name (LPSN)	Alteromonas sediminis Ye et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67881]	Gram stain	negative

[Ref.: #67881]	Cell length	1.2-1.7 µm

[Ref.: #67881]	Cell width	0.3-0.6 µm

[Ref.: #67881]	Cell shape	rod-shaped

[Ref.: #67881]	Motility	yes

[Ref.: #67881]	Flagellum arrangement	gliding

[Ref.: #67881]	Colony size	0.5-1.5 mm
[Ref.: #67881]	Colony color	yellow-green
[Ref.: #67881]	Colony shape	circular
[Ref.: #67881]	Incubation period	2 days
[Ref.: #67881]	Cultivation medium used	Marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67881]			growth	20-40 °C
[Ref.: #67881]			optimum	37 °C

[Ref.: #67881]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #67881]			optimum	7-7.5
[Ref.: #67881]			growth	6.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67881]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67881]		NaCl		growth	1-6	%(w/v)
[Ref.: #67881]		NaCl		optimum	2-3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67881]	2-oxogluconate	+	oxidation
[Ref.: #67881]	acetoacetate ChEBI	+	oxidation
[Ref.: #67881]	alginate ChEBI	+	hydrolysis
[Ref.: #67881]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #67881]	casein	-	hydrolysis
[Ref.: #67881]	citrate ChEBI	+	assimilation
[Ref.: #67881]	D-fructose 6-phosphate ChEBI	+	oxidation
[Ref.: #67881]	D-galactose ChEBI	+	builds acid from
[Ref.: #67881]	D-glucose ChEBI	+	builds acid from
[Ref.: #67881]	D-ribose ChEBI	+	builds acid from
[Ref.: #67881]	D-tagatose ChEBI	+	builds acid from
[Ref.: #67881]	L-malate ChEBI	+	oxidation
[Ref.: #67881]	L-sorbose ChEBI	+	builds acid from
[Ref.: #67881]	nitrate ChEBI	-	reduction
[Ref.: #67881]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #67881]	starch ChEBI	+	hydrolysis
[Ref.: #67881]	turanose ChEBI	+	oxidation
[Ref.: #67881]	tween 20 ChEBI	+	hydrolysis
[Ref.: #67881]	tween 40 ChEBI	+	hydrolysis
[Ref.: #67881]	tween 60 ChEBI	+	hydrolysis
[Ref.: #67881]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #67881]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #67881]	cefotaxime sodium ChEBI	yes	30	µg (disc)
[Ref.: #67881]	ceftriaxone ChEBI	yes	30	µg (disc)
[Ref.: #67881]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #67881]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #67881]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #67881]	lincomycin ChEBI				yes	2	µg (disc)
[Ref.: #67881]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #67881]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #67881]	norfloxacin ChEBI	yes	10	µg (disc)
[Ref.: #67881]	ofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #67881]	penicillin ChEBI	yes	10	µg (disc)
[Ref.: #67881]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #67881]	spiramycin II ChEBI	yes	30	µg (disc)
[Ref.: #67881]	sulfamethoxydiazine ChEBI	yes	5	µg (disc)
[Ref.: #67881]	tetracycline ChEBI				yes	30	µg (disc)
[Ref.: #67881]	tobramycin ChEBI	yes	10	µg (disc)
[Ref.: #67881]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67881]	acetoin ChEBI	no
[Ref.: #67881]	hydrogen sulfide ChEBI	no
[Ref.: #67881]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #67881]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #67881]	acid phosphatase	+	3.1.3.2
[Ref.: #67881]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67881]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #67881]	alpha-galactosidase	-	3.2.1.22
[Ref.: #67881]	alpha-glucosidase	-	3.2.1.20
[Ref.: #67881]	alpha-mannosidase	-	3.2.1.24
[Ref.: #67881]	arginine dihydrolase	-	3.5.3.6
[Ref.: #67881]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #67881]	beta-galactosidase	-	3.2.1.23
[Ref.: #67881]	beta-glucosidase	-	3.2.1.21
[Ref.: #67881]	beta-glucuronidase	-	3.2.1.31
[Ref.: #67881]	catalase	+	1.11.1.6
[Ref.: #67881]	cystine arylamidase	+	3.4.11.3
[Ref.: #67881]	cytochrome oxidase	+	1.9.3.1
[Ref.: #67881]	esterase (C 4)	+
[Ref.: #67881]	esterase Lipase (C 8)	+
[Ref.: #67881]	gelatinase	+
[Ref.: #67881]	leucine arylamidase	+	3.4.11.1
[Ref.: #67881]	lipase (C 14)	-
[Ref.: #67881]	lysine decarboxylase	-	4.1.1.18
[Ref.: #67881]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #67881]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67881]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #67881]	trypsin	+	3.4.21.4
[Ref.: #67881]	urease	-	3.5.1.5
[Ref.: #67881]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67881]	Sample type/isolated from	sediment of a sea cucumber culture pond
[Ref.: #67881]	Sampling date	2016
[Ref.: #67881]	Geographic location (country and/or sea, region)	Weihai, Shandong province
[Ref.: #67881]	Country	China
[Ref.: #67881]	Country ISO 3 Code	CHN
[Ref.: #67881]	Continent	Asia
[Ref.: #67881]	Geographic location	36.9100°/122.2430°
[Ref.: #67881]	Enrichment culture	marine agar 2216
[Ref.: #67881]	Enrichment culture duration	1 week
[Ref.: #67881]	Enrichment culture temperature	25 ̊C
[Ref.: #67881]	Isolation/enrichment procedure	sample was serially diluted in seawater and plated on marine agar 2216 and incubated at 25°C for 1 week.
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67881]	Alteromonas sediminis 16S ribosomal RNA gene, partial sequence	MF797951	1458	ENA	2259342 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67881]	Alteromonas sediminis U0105	GCA_003820355	contig	GenBank	2259342 tax ID
[Ref.: #66792]	Alteromonas sediminis U0105	2899565944	draft	JGI IMG/M	2259342 tax ID	*

[Ref.: #67881]

GC-content

45.3 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67881]

Culture collection no.

KCTC 62080, MCCC 1H00299

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alteromonas sediminis sp. nov., isolated from sediment in a sea cucumber culture pond.	Ye MQ, Han JR, Wang C, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003358	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67881

Meng-Qi Ye, Ji-Ru Han, Chong Wang, Zong-Jun Du: Alteromonas sediminis sp. nov., isolated from sediment in a sea cucumber culture pond. IJSEM 69: 1579 - 1584 2019 ( DOI 10.1099/ijsem.0.003358 )

* These data were automatically processed and therefore are not curated

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