Name: Thermogemmatispora argillosa A3-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166501

Type strain:

Species: Thermogemmatispora argillosa

Strain Designation: A3-2

Culture col. no.: NBRC 113122, CGMCC 1.13887

NCBI tax ID(s): 2045280 (species)

Section

Thermogemmatispora argillosa A3-2 is an aerobe, spore-forming, thermophilic bacterium that was isolated from geothermal clay soil.

Gram-positive
spore-forming
aerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Chloroflexota*
	Class	*Ktedonobacteria*
	Order	*Thermogemmatisporales*
	Family	*Thermogemmatisporaceae*
	Genus	*Thermogemmatispora*
	Species	**Thermogemmatispora argillosa**
	Full Scientific Name (LPSN)	Thermogemmatispora argillosa Zheng et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67887]	Gram stain	positive

[Ref.: #67887]	Motility	no

[Ref.: #67887]	Colony color	orange
[Ref.: #67887]	Cultivation medium used	10-fold diluted R2A medium

[Ref.: #67887]	Colony color	orange
[Ref.: #67887]	Cultivation medium used	ISP3

[Ref.: #67887]	Multicellular complex forming ability	yes
[Ref.: #67887]	Multicellular complex further description	form branched aerial mycelium with multiple grape-like exospores per mother cell

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67887]			growth	40-78 °C
[Ref.: #67887]			optimum	60-65 °C

[Ref.: #67887]

Temperature range

thermophilic

	pH	Kind of pH		pH
[Ref.: #67887]			optimum	6-7
[Ref.: #67887]			growth	3.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67887]

Oxygen tolerance

aerobe

[Ref.: #67887]	Spore description	multiple grape-like exospores per mother cell
[Ref.: #67887]	Type of spore	exospore (microbial cyst)
[Ref.: #67887]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67887]		NaCl		growth	0-1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67887]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #67887]	casein	+	hydrolysis
[Ref.: #67887]	chitin ChEBI	+	hydrolysis
[Ref.: #67887]	D-glucose ChEBI	-	carbon source
[Ref.: #67887]	gelatin ChEBI	-	hydrolysis
[Ref.: #67887]	gellan gum ChEBI	+	carbon source
[Ref.: #67887]	myo-inositol ChEBI	-	carbon source
[Ref.: #67887]	starch ChEBI	+	hydrolysis
[Ref.: #67887]	sucrose ChEBI	-	carbon source
[Ref.: #67887]	xylan ChEBI	+	hydrolysis

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #67887]		catalase	+	1.11.1.6

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #67887]

Fatty acid	Percentage
C17:0 iso	41.5
C19:0 iso	18
12,17-Dimethyl C18:0	15.3
C18:0 iso	7
C18:0	4.3
C19:0 anteiso	3.6
C17:0 anteiso	2
C16:1 2-OH	1.6
C16:0	1.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67887]	Sample type/isolated from	geothermal clay soil
[Ref.: #67887]	Geographic location (country and/or sea, region)	Jigokudani, Onikobe geothermal area of Osaki City, Miyagi Prefecture
[Ref.: #67887]	Country	Japan
[Ref.: #67887]	Country ISO 3 Code	JPN
[Ref.: #67887]	Continent	Asia
[Ref.: #67887]	Geographic location	38.8039°/140.6730°
[Ref.: #67887]	Enrichment culture	10-fold diluted R2A broth gellan gum medium
[Ref.: #67887]	Enrichment culture composition	supplemented with 20 ppm sodium azide. The pH of the medium was adjusted to 6.0 with HCl and NaOH at room temperature of about 20°C, and 1.5 % gellan gum was added for solidification.
[Ref.: #67887]	Enrichment culture duration	2 weeks
[Ref.: #67887]	Enrichment culture temperature	65 ̊C
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67887]	Thermogemmatispora argillosa A3-2 gene for 16S ribosomal RNA, partial sequence	LC328546	1484	ENA	2045280 tax ID

[Ref.: #67887]

GC-content

63.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67887]

Culture collection no.

NBRC 113122, CGMCC 1.13887

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermogemmatispora aurantia sp. nov. and Thermogemmatispora argillosa sp. nov., within the class Ktedonobacteria, and emended description of the genus Thermogemmatispora.	Zheng Y, Wang CM, Sakai Y, Abe K, Yokota A, Yabe S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003388	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67887

Yu Zheng, Chiung-Mei Wang, Yasuteru Sakai, Keietsu Abe, Akira Yokota, Shuhei Yabe: Thermogemmatispora aurantia sp. nov. and Thermogemmatispora argillosa sp. nov., within the class Ktedonobacteria, and emended description of the genus Thermogemmatispora. IJSEM 69: 1744 - 1750 2019 ( DOI 10.1099/ijsem.0.003388 )

* These data were automatically processed and therefore are not curated

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