Name: Beijerinckia indica DSM 1715
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1665

Type strain:

Species: Beijerinckia indica

Culture col. no.: DSM 1715, ATCC 9039, NCIB 8712

Strain history: <- NCIB <- C.B. van Niel

NCBI tax ID(s): 533 (species)

SI-ID 1222

LMG 2817, ATCC 9039, LMG 3901, LMG 3910, NCIB 8712, NCIMB 8712, LMD 38.7, CECT 840, KCTC 12011, NCCB 38007, HAMBI 2265, CCUG 53672, DSM 1715

Other strains from Beijerinckia indica

B. indica B.102.C, DSM 591
B. indica DSM 724, ATCC 9037, IFO 3744, NBRC ...

Section

Beijerinckia indica DSM 1715 is a mesophilic, Gram-negative bacterium of the family Beijerinckiaceae.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Beijerinckiaceae*
	Genus	*Beijerinckia*
	Species	**Beijerinckia indica**
	Full Scientific Name (LPSN)	Beijerinckia indica (Starkey and De 1939) Derx 1950 (Approved Lists 1980)

Synonym

"Azotobacter indicum"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

Information on culture and growth conditions Culture and growth conditions

[Ref.: #872]

Culture medium

BEIJERINCKIA MEDIUM (DSMZ Medium 111)

[Ref.: #872]

Culture medium growth

[Ref.: #872]

Culture medium link

Medium recipe at MediaDive

[Ref.: #872]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #872]			growth	30 °C

[Ref.: #872]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AJ563930 (>99% sequence identity) for Beijerinckia from Microbeatlas

Aquatic Samples	99
Soil Samples	101
Animal Samples	14
Plant Samples	9
Total Samples	223

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #872]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #872]	Beijerinckia indica subsp. indica partial 16S rRNA gene, strain ATCC 9039	AJ563930	1411	ENA	395963 tax ID
[Ref.: #20218]	Beijerinckia indica ribosomal RNA small subunit	M59060	1436	ENA	533 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Beijerinckia indica subsp. indica ATCC 9039	GCA_000019845	complete	GenBank	395963 tax ID	*
[Ref.: #66792]	Beijerinckia indica subsp. indica ATCC 9039	395963.13	complete	PATRIC	395963 tax ID	*
[Ref.: #66792]	Beijerinckia indica subsp. indica ATCC 9039	395963.24	plasmid	PATRIC	395963 tax ID	*
[Ref.: #66792]	Beijerinckia indica subsp. indica ATCC 9039	395963.23	plasmid	PATRIC	395963 tax ID	*
[Ref.: #66792]	Beijerinckia indica indica ATCC 9039	641522606	complete	JGI IMG/M	395963 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Beijerinckia indica subsp. indica ATCC 9039 ATCC 9039 NCBI: GCA_000019845.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Beijerinckia indica subsp. indica ATCC 9039 ATCC 9039 NCBI: GCA_000019845.1
[Ref.: #69480]	motile	yes	71.43	no
[Ref.: #69480]	flagellated	no	82.161	no
[Ref.: #69480]	gram-positive	no	96.691	no
[Ref.: #69480]	anaerobic	no	98.053	no
[Ref.: #69480]	aerobic	yes	89.606	no
[Ref.: #69480]	halophile	no	95.113	no
[Ref.: #69480]	spore-forming	no	89.405	no
[Ref.: #69480]	thermophile	no	94.237	yes
[Ref.: #69480]	glucose-util	yes	87.454	no
[Ref.: #69480]	glucose-ferment	no	91.023	no

Availability in culture collections External links

[Ref.: #872]

Culture collection no.

DSM 1715, ATCC 9039, NCIB 8712

[Ref.: #71312]

SI-ID 1222

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methylocella silvestris sp. nov., a novel methanotroph isolated from an acidic forest cambisol.	Dunfield PF, Khmelenina VN, Suzina NE, Trotsenko YA, Dedysh SN	Int J Syst Evol Microbiol	10.1099/ijs.0.02481-0	2003	*

References

#872	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1715

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71312

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID1222.1 )

* These data were automatically processed and therefore are not curated

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Beijerinckia indica subsp. indica ATCC 9039 ATCC 9039

Beijerinckia indica subsp. indica ATCC 9039 ATCC 9039

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