Name: Aequoribacter fuscus KACC 15529
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166411

Type strain:

Species: Aequoribacter fuscus

Culture col. no.: KACC 15529, NBRC 108213, IMCC 3088

NCBI tax ID(s): 2518989 (species)

Section

Aequoribacter fuscus KACC 15529 is an obligate aerobe, chemoheterotroph, Gram-negative bacterium that forms circular colonies and was isolated from coastal surface seawater.

colony-forming
Gram-negative
rod-shaped
chemoheterotroph
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Halieaceae*
	Genus	*Aequoribacter*
	Species	**Aequoribacter fuscus**
	Full Scientific Name (LPSN)	Aequoribacter fuscus Li et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #68362]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.995

[Ref.: #68362]	Cell length	1.1-2.8 µm

[Ref.: #68362]	Cell width	0.6-0.8 µm

[Ref.: #68362]	Cell shape	rod-shaped

[Ref.: #68362]	Motility	no

[Ref.: #68362]	Colony size	0.5-1.5 mm
[Ref.: #68362]	Colony color	brown
[Ref.: #68362]	Colony shape	circular
[Ref.: #68362]	Incubation period	5 days
[Ref.: #68362]	Cultivation medium used	Marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #68362]			growth	10-35 °C
[Ref.: #68362]			optimum	25 °C

[Ref.: #68362]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #68362]			optimum	6.5-7.5
[Ref.: #68362]			growth	6-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68362]

Oxygen tolerance

obligate aerobe

[Ref.: #68362]

Nutrition type

chemoheterotroph

[Ref.: #68362]	Type of spore	endospore
[Ref.: #68362]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68362]		NaCl		growth	0.5-6	%(w/v)
[Ref.: #68362]		NaCl		optimum	3.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68362]	amygdalin ChEBI	+	builds acid from
[Ref.: #68362]	D-glucosamine ChEBI	+	carbon source
[Ref.: #68362]	D-glucose ChEBI	+	builds acid from
[Ref.: #68362]	D-glucose ChEBI	+	carbon source
[Ref.: #68362]	D-glucuronate ChEBI	+	carbon source
[Ref.: #68362]	D-trehalose ChEBI	+	carbon source
[Ref.: #68362]	esculin ChEBI	+	hydrolysis
[Ref.: #68362]	gelatin ChEBI	+	hydrolysis
[Ref.: #68362]	gluconate ChEBI	+	carbon source
[Ref.: #68362]	glucose ChEBI	-	fermentation
[Ref.: #68362]	L-arabinose ChEBI	+	carbon source
[Ref.: #68362]	L-ornithine ChEBI	+	carbon source
[Ref.: #68362]	L-rhamnose ChEBI	+	carbon source
[Ref.: #68362]	maltose ChEBI	+	builds acid from
[Ref.: #68362]	melezitose ChEBI	+	carbon source
[Ref.: #68362]	methylamine ChEBI	+	carbon source
[Ref.: #68362]	myo-inositol ChEBI	+	carbon source
[Ref.: #68362]	nitrate ChEBI	-	reduction
[Ref.: #68362]	potassium 2-dehydro-D-gluconate	+	builds acid from
[Ref.: #68362]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #68362]	proline ChEBI	+	carbon source
[Ref.: #68362]	starch ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68362]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68362]	acid phosphatase	+	3.1.3.2
[Ref.: #68362]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68362]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #68362]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68362]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68362]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68362]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68362]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68362]	beta-galactosidase	-	3.2.1.23
[Ref.: #68362]	beta-glucosidase	-	3.2.1.21
[Ref.: #68362]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68362]	catalase	+	1.11.1.6
[Ref.: #68362]	cystine arylamidase	+	3.4.11.3
[Ref.: #68362]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68362]	esterase (C 4)	+
[Ref.: #68362]	esterase Lipase (C 8)	+
[Ref.: #68362]	leucine arylamidase	+	3.4.11.1
[Ref.: #68362]	lipase (C 14)	-
[Ref.: #68362]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68362]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68362]	trypsin	+	3.4.21.4
[Ref.: #68362]	urease	-	3.5.1.5
[Ref.: #68362]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68362]

Fatty acid	Percentage
C16:1 w7c/C16:1 w6c	30
C15:1 w6c	14.8
C15:1 w8c	13.6
C11:0 3OH	7.9
C17:1 w6c	7.4
C17:1 w8c	4.9
C10:0 3OH	3.7
C13:0	3.7
C18:1 w7c/C18:1 w6c	3.1
C16:0	2.6
C17:0	2.5
C14:0	1.9
C11:0	1.7
C10:0	0.3
C12:0	0.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68362]	Sample type/isolated from	coastal surface seawater
[Ref.: #68362]	Sampling date	2005-10-01
[Ref.: #68362]	Geographic location (country and/or sea, region)	Yellow Sea
[Ref.: #68362]	Country	Republic of Korea
[Ref.: #68362]	Country ISO 3 Code	KOR
[Ref.: #68362]	Continent	Asia
[Ref.: #68362]	Enrichment culture	1/10-fold 3M-R2A agar
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MN592636 (>99% sequence identity) for Halieaceae from Microbeatlas

Aquatic Samples	5721
Soil Samples	164
Animal Samples	386
Plant Samples	18
Total Samples	6289

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68362]	Aequoribacter fuscus strain IMCC3088 16S ribosomal RNA gene, partial sequence	MN592636	1442	ENA	2518989 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68362]	Aequoribacter fuscus IMCC3088	GCA_009910365	complete	GenBank	2518989 tax ID

[Ref.: #68362]

GC-content

51.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aequoribacter fuscus IMCC3088 NCBI: GCA_009910365.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aequoribacter fuscus IMCC3088 NCBI: GCA_009910365.1
[Ref.: #69480]	flagellated	no	74.953	yes
[Ref.: #69480]	gram-positive	no	98.98	no
[Ref.: #69480]	anaerobic	no	97.956	no
[Ref.: #69480]	aerobic	yes	79.728	no
[Ref.: #69480]	halophile	yes	64.753	no
[Ref.: #69480]	spore-forming	no	97.075	yes
[Ref.: #69480]	glucose-util	yes	89.149	yes
[Ref.: #69480]	thermophile	no	94.778	yes
[Ref.: #69480]	motile	yes	74.74	yes
[Ref.: #69480]	glucose-ferment	no	91.929	yes

Availability in culture collections External links

[Ref.: #68362]

Culture collection no.

KACC 15529, NBRC 108213, IMCC 3088

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aequoribacter fuscus gen. nov., sp. nov., a new member of the family Halieaceae, isolated from coastal seawater.	Li SH, Song J, Kang I, Hwang J, Cho JC	J Microbiol	10.1007/s12275-020-0206-1	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#68362

Shan-Hui Li, Jaeho Song, Ilnam Kang, Juchan Hwang & Jang-Cheon Cho: Aequoribacter fuscus gen. nov., sp. nov., a new member of the family Halieaceae, isolated from coastal seawater. J. Microbiol. 58: 463 - 471 2020 ( DOI 10.1007/s12275-020-0206-1 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Aequoribacter fuscus IMCC3088

Aequoribacter fuscus IMCC3088

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