Lignipirellula cremea Pla85_3_4 | Type strain | DSM 103796, LMG 29741

Strain identifier

BacDive ID: 166384

Type strain:

Species: Lignipirellula cremea

Strain Designation: Pla85_3_4

Strain history: <- M. Jogler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; Pla85_3_4 {2016} <- A. Heuer, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; {2016}

NCBI tax ID(s): 2528010 (species)

SI-ID 408007

DSM 103796

Other strains from Lignipirellula cremea

Section

External links

Lignipirellula cremea Pla85_3_4 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from polyethylene pellets , incubated in brackish water, close to a wastewater treatment plant, 2m depth for 14 days.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Pirellulales*
	Family	*Pirellulaceae*
	Genus	*Lignipirellula*
	Species	**Lignipirellula cremea**
	Full Scientific Name (LPSN)	Lignipirellula cremea Peeters et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #68100]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #68100]	Cell length	1.8-2.6 µm

[Ref.: #68100]	Cell width	0.9-1.5 µm

[Ref.: #68100]	Cell shape	rod-shaped

Multimedia content

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Caption:

DSM 103796, scale bar represents 2 µm

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

PLANCTOMYCES MEDIUM (DSMZ Medium 1560)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #68100]	growth	10-30 °C
[Ref.: #68100]	optimum	26 °C
[Ref.: #69076]	growth	28 °C

[Ref.: #68100]	Temperature range	mesophilic
[Ref.: #69076]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68100]			optimum	7.5
[Ref.: #68100]			growth	6.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68100]

Oxygen tolerance

aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.998

[Ref.: #68100]	Observation	pear-shaped
[Ref.: #68100]	Observation	has a doubling time of about 26 h
[Ref.: #68100]	Observation	form aggregates
[Ref.: #68100]	Observation	lack pigmentation
[Ref.: #68100]	Observation	Crateriform structures are not observed
[Ref.: #68100]	Observation	Daughter cells have the same shape as the mother cell
[Ref.: #68100]	Observation	divide by polar budding
[Ref.: #68100]	Observation	neutrophilic and heterotrophic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68100]	Sample type/isolated from	polyethylene (PE) pellets (ExxonMobil HDPE HTA 108, diameter 3 mm), incubated in brackish water, close to a wastewater treatment plant, 2m depth for 14 days
[Ref.: #68100]	Sampling date	2014-09-04
[Ref.: #68100]	Geographic location (country and/or sea, region)	Rostock
[Ref.: #68100]	Country	Germany
[Ref.: #68100]	Country ISO 3 Code	DEU
[Ref.: #68100]	Continent	Europe
[Ref.: #68100]	Geographic location	54.1060°/12.0960°

[Ref.: #69076]	Sample type/isolated from	submerged wood pellets suspended near the discharge of a waste water treatment plant
[Ref.: #69076]	Geographic location (country and/or sea, region)	estuary Warnow river near Rostock
[Ref.: #69076]	Country	Germany
[Ref.: #69076]	Country ISO 3 Code	DEU
[Ref.: #69076]	Continent	Europe
[Ref.: #69076]	Geographic location	54.1060°/12.0960°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68100]	Lignipirellula cremea strain Pla85_3_4 16S ribosomal RNA gene, partial sequence	MK559988	1528	ENA	2528010 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68100]	Lignipirellula cremea Pla85_3_4	GCA_007751035	complete	GenBank	2528010 tax ID

[Ref.: #68100]	GC-content	61 mol%	genome sequence analysis
[Ref.: #69076]	GC-content	61.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lignipirellula cremea Pla85_3_4 NCBI: GCA_007751035.1
[Ref.: #69481]	spore-forming	no	85	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lignipirellula cremea Pla85_3_4 NCBI: GCA_007751035.1
[Ref.: #69480]	flagellated	no	81.227	no
[Ref.: #69480]	gram-positive	no	97.846	no
[Ref.: #69480]	anaerobic	no	96.131	yes
[Ref.: #69480]	aerobic	yes	80.219	yes
[Ref.: #69480]	halophile	no	75.746	no
[Ref.: #69480]	spore-forming	no	88.328	no
[Ref.: #69480]	thermophile	no	98.889	no
[Ref.: #69480]	glucose-util	yes	80.762	no
[Ref.: #69480]	motile	yes	86.295	no
[Ref.: #69480]	glucose-ferment	no	88.72	no

Availability in culture collections External links

[Ref.: #68100]

Culture collection no.

DSM 103796, LMG 29741

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SI-ID 408007

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lignipirellula cremea gen. nov., sp. nov., a planctomycete isolated from wood particles in a brackish river estuary.	Peeters SH, Wiegand S, Kallscheuer N, Jogler M, Heuer A, Jetten MSM, Boedeker C, Rohde M, Jogler C	Antonie Van Leeuwenhoek	10.1007/s10482-020-01407-4	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#68100

Stijn H. Peeters, Sandra Wiegand, Nicolai Kallscheuer, Mareike Jogler, Anja Heuer, Mike S. M. Jetten, Christian Boedeker, Manfred Rohde, Christian Jogler: Lignipirellula cremea gen. nov., sp. nov., a planctomycete isolated from wood particles in a brackish river estuary. Antonie Van Leeuwenhoek 113: 1863 - 1875 2020 ( DOI 10.1007/s10482-020-01407-4 )

#69076

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103796

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114773

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408007.1 )

* These data were automatically processed and therefore are not curated

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