Name: Methylolobus oryzae C50C1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166371

Type strain:

Species: Methylolobus oryzae

Strain Designation: C50C1

Section

Methylolobus oryzae C50C1 is a Gram-negative, coccus-shaped bacterium that was isolated from rice field.

coccus-shaped
Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Methylococcales*
	Family	*Methylococcaceae*
	Genus	"Methylolobus"
	Species	"Methylolobus oryzae"
	Full Scientific Name (LPSN)	Methylolobus oryzae Rahalkar et al. 2020

Synonym

"Methylotetracoccus oryzae"

Information on morphological and physiological properties Morphology

[Ref.: #68101]	Gram stain	negative

[Ref.: #68101]	Cell shape	coccus-shaped

[Ref.: #68101]	Motility	no

[Ref.: #68101]

Colony color

white to brown

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #68101]			optimum	18-25 °C

	pH	Kind of pH		pH
[Ref.: #68101]			optimum	4.3-8.3

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68101]	Observation	Obligate methanotroph
[Ref.: #68101]	Observation	can utilise methane or methanol as the sole source of C and energy
[Ref.: #68101]	Observation	reproduce by binary fission
[Ref.: #68101]	Observation	occur singly, in pairs, triads, tetracocci or aggregates
[Ref.: #68101]	Observation	Can grow under neutral or a broader pH range
[Ref.: #68101]	Observation	Growth on methanol (range of concentration) 0.1-4% (vol/vol)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68101]	Sample type/isolated from	rice field
[Ref.: #68101]	Country	China
[Ref.: #68101]	Country ISO 3 Code	CHN
[Ref.: #68101]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68101]	Methylotetracoccus oryzae C50C1	GCA_006175985	contig	GenBank	1919059 tax ID

[Ref.: #68101]

GC-content

62.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methylotetracoccus oryzae C50C1 NCBI: GCA_006175985.1
[Ref.: #69480]	motile	no	83.304	no
[Ref.: #69480]	flagellated	no	93.629	yes
[Ref.: #69480]	gram-positive	no	98.93	yes
[Ref.: #69480]	anaerobic	no	96.818	no
[Ref.: #69480]	aerobic	yes	66.703	no
[Ref.: #69480]	halophile	no	89.846	no
[Ref.: #69480]	spore-forming	no	91.954	no
[Ref.: #69480]	glucose-util	yes	65.52	no
[Ref.: #69480]	thermophile	no	99.349	no
[Ref.: #69480]	glucose-ferment	no	87.656	no

Availability in culture collections External links

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methylotetracoccus oryzae Strain C50C1 Is a Novel Type Ib Gammaproteobacterial Methanotroph Adapted to Freshwater Environments.	Ghashghavi M, Belova SE, Bodelier PLE, Dedysh SN, Kox MAR, Speth DR, Frenzel P, Jetten MSM, Lucker S, Luke C	mSphere	10.1128/mSphere.00631-18	2019	*
Phylogeny	A novel Type I methanotroph Methylolobus aquaticus gen. nov. sp. nov. isolated from a tropical wetland.	Rahalkar MC, Khatri K, Mohite J, Pandit PS, Bahulikar RA	Antonie Van Leeuwenhoek	10.1007/s10482-020-01410-9	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#68101

Monali C. Rahalkar, Kumal Khatri, Jyoti Mohite, Pranitha S. Pandit, Rahul A. Bahulikar: A novel Type I methanotroph Methylolobus aquaticus gen. nov. sp. nov. isolated from a tropical wetland. Antonie Van Leeuwenhoek 113: 959 - 971 2020 ( DOI 10.1007/s10482-020-01410-9 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Methylotetracoccus oryzae C50C1

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