Name: Deinococcus arcticus OD32
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166257

Type strain:

Species: Deinococcus arcticus

Strain Designation: OD32

Culture col. no.: KCTC 33972, CICC 24671

NCBI tax ID(s): 2136176 (species)

Section

Deinococcus arcticus OD32 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from soil sample taken from Silene acaulis rhizosphere collected from the Arctic tundra.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus arcticus**
	Full Scientific Name (LPSN)	Deinococcus arcticus Wang et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #68032]	Gram stain	negative

[Ref.: #68032]	Cell length	1.3-2.5 µm

[Ref.: #68032]	Cell width	0.8 µm

[Ref.: #68032]	Cell shape	rod-shaped

[Ref.: #68032]	Motility	no

[Ref.: #68032]	Colony color	red
[Ref.: #68032]	Colony shape	circular
[Ref.: #68032]	Incubation period	2 days
[Ref.: #68032]	Cultivation medium used	YTSA

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #68032]			growth	15-37 °C
[Ref.: #68032]			optimum	33 °C

[Ref.: #68032]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #68032]			optimum	7.5-8.0
[Ref.: #68032]			growth	6.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68032]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68032]		NaCl		growth	0.0-0.5	%
[Ref.: #68032]		NaCl		optimum	0	%

[Ref.: #68032]	Observation	The predominant respiratory quinone is menaquinone 8
[Ref.: #68032]	Observation	The predominant polar lipid is phosphoglycolipid
[Ref.: #68032]	Observation	No growth observed in anaerobic conditions by anaerobic respiration with NO2 - or NO3 - as electron acceptors

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68032]	acetic acid ChEBI	+	oxidation
[Ref.: #68032]	acetoacetate ChEBI	+	oxidation
[Ref.: #68032]	alginate ChEBI	+	degradation
[Ref.: #68032]	alpha-D-glucose ChEBI	+	oxidation
[Ref.: #68032]	carboxymethylcellulose ChEBI	-	degradation
[Ref.: #68032]	D-fructose ChEBI	+	oxidation
[Ref.: #68032]	dna ChEBI	-	degradation
[Ref.: #68032]	glucuronamide ChEBI	+	oxidation
[Ref.: #68032]	starch ChEBI	+	degradation
[Ref.: #68032]	tween 20 ChEBI	+	degradation
[Ref.: #68032]	tween 40 ChEBI	+	degradation
[Ref.: #68032]	tween 60 ChEBI	+	degradation
[Ref.: #68032]	tween 80 ChEBI	-	degradation
	Only first 10 entries are displayed. Click here to see all.

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68032]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68032]	acid phosphatase	+	3.1.3.2
[Ref.: #68032]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68032]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68032]	beta-galactosidase	+	3.2.1.23
[Ref.: #68032]	catalase	+	1.11.1.6
[Ref.: #68032]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68032]	esterase Lipase (C 8)	+
[Ref.: #68032]	gelatinase	+
[Ref.: #68032]	leucine arylamidase	+	3.4.11.1
[Ref.: #68032]	tryptophan deaminase	+	4.1.99.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68032]

Fatty acid	Percentage
C16:1 w7c / C16:1 w6c	22.3
C15:1 w6c	19.6
C17:1 w6c	9.2
C17:0	9
C16:0	8.1
C17:0 iso	8
C15:0 iso	5.4
C18:1 w7c	3.9
C16:0 iso	2.5
C16:1 w5c	1.9
C17:0 anteiso	1.2
C15:0 anteiso	1.2
C17:1 w8c	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68032]	Sample type/isolated from	soil sample taken from Silene acaulis rhizosphere collected from the Arctic tundra
[Ref.: #68032]	Geographic location (country and/or sea, region)	Arctic Yellow River Station in Ny-Alesund, Svalbard
[Ref.: #68032]	Country	Norway
[Ref.: #68032]	Country ISO 3 Code	NOR
[Ref.: #68032]	Continent	Europe
[Ref.: #68032]	Geographic location	78.9097°/12.0878°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68032]	Deinococcus sp. strain OD32 16S ribosomal RNA gene, partial sequence	MG696181	1505	ENA	2136176 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68032]	Deinococcus arcticus OD32	GCA_003028415	contig	GenBank	2136176 tax ID

[Ref.: #68032]

GC-content

68.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Deinococcus arcticus OD32 NCBI: GCA_003028415.1
[Ref.: #69480]	flagellated	no	93.839	yes
[Ref.: #69480]	gram-positive	yes	66.128	yes
[Ref.: #69480]	anaerobic	no	98.411	yes
[Ref.: #69480]	halophile	no	93.892	yes
[Ref.: #69480]	spore-forming	no	88.817	no
[Ref.: #69480]	glucose-util	yes	84.69	no
[Ref.: #69480]	aerobic	yes	89.23	yes
[Ref.: #69480]	thermophile	no	81.822	yes
[Ref.: #69480]	motile	no	90.824	no
[Ref.: #69480]	glucose-ferment	no	89.533	no

Availability in culture collections External links

[Ref.: #68032]

Culture collection no.

KCTC 33972, CICC 24671

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus arcticus sp. nov., isolated from Silene acaulis rhizosphere soil of the Arctic tundra.	Wang XP, Li CM, Yu Y, Li HR, Du ZJ, Mu DS	Int J Syst Evol Microbiol	10.1099/ijsem.0.003636	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#68032

Xin-Peng Wang, Chang-Ming Li, Yong Yu, Hui-Rong Li, Zong-Jun Du, Da-shuai Mu: Deinococcus arcticus sp. nov., isolated from Silene acaulis rhizosphere soil of the Arctic tundra. IJSEM 69: 3437 - 3442 2019 ( DOI 10.1099/ijsem.0.003636 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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