Name: Companilactobacillus huachuanensis 395-6.2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166202

Type strain:

Species: Companilactobacillus huachuanensis

Strain Designation: 395-6.2

Culture col. no.: CCM 8927, NCIMB 15188, LMG 31179

NCBI tax ID(s): 2559914 (species)

Section

Companilactobacillus huachuanensis 395-6.2 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from traditional pickle, known as 'suancai' and is made from Chinese cabbage.

colony-forming
Gram-positive
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Companilactobacillus*
	Species	**Companilactobacillus huachuanensis**
	Full Scientific Name (LPSN)	Companilactobacillus huachuanensis (Fu and Gu 2019) Zheng et al. 2020

Synonym

Lactobacillus huachuanensis

Information on morphological and physiological properties Morphology

[Ref.: #68005]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #68005]	Cell length	1.5-3.0 µm

[Ref.: #68005]	Cell width	1 µm

[Ref.: #68005]	Cell shape	rod-shaped

[Ref.: #68005]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %96.707

[Ref.: #68005]	Colony size	1.5-2.0 mm
[Ref.: #68005]	Colony color	beige
[Ref.: #68005]	Colony shape	circular
[Ref.: #68005]	Incubation period	2 days
[Ref.: #68005]	Cultivation medium used	mMRS agar

[Ref.: #68005]	Colony shape	oval

Information on culture and growth conditions Culture and growth conditions

	Kind of temperature		Temperature
[Ref.: #68005]		growth	15-37 °C
[Ref.: #68005]		optimum	30 °C
[Ref.: #68005]	no	growth	5 °C
[Ref.: #68005]	no	growth	45 °C

[Ref.: #68005]	Temperature range	mesophilic
[Ref.: #68005]	Temperature range	psychrophilic
[Ref.: #68005]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #68005]			growth	5
[Ref.: #68005]		no	growth	11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68005]

Oxygen tolerance

facultative anaerobe

[Ref.: #68005]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68005]		NaCl		growth	5	%(w/v)
[Ref.: #68005]		NaCl	no	growth	6	%(w/v)

[Ref.: #68005]	Observation	occur singly, or in short chains
[Ref.: #68005]	Observation	Cells do not contain meso-diaminopimelic acid in their cell-wall peptidoglycan, and the diagnostic diamino acid is lysine
[Ref.: #68005]	Observation	Both isomers of lactic acid are produced (10% D-lactate and 90% L-lactate)

[Ref.: #68005]

Name of tolerated compound

tellurite

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68005]	amygdalin ChEBI	+	builds acid from
[Ref.: #68005]	arbutin ChEBI	+	builds acid from
[Ref.: #68005]	arginine ChEBI	+	assimilation
[Ref.: #68005]	cellobiose ChEBI	+	builds acid from
[Ref.: #68005]	D-arabinose ChEBI	-	builds acid from
[Ref.: #68005]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68005]	D-fructose ChEBI	+	builds acid from
[Ref.: #68005]	D-fucose ChEBI	-	builds acid from
[Ref.: #68005]	D-galactose ChEBI	+	builds acid from
[Ref.: #68005]	D-glucose ChEBI	+	builds acid from
[Ref.: #68005]	D-lyxose ChEBI	-	builds acid from
[Ref.: #68005]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68005]	D-mannose ChEBI	+	builds acid from
[Ref.: #68005]	D-ribose ChEBI	-	builds acid from
[Ref.: #68005]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #68005]	D-tagatose ChEBI	+	builds acid from
[Ref.: #68005]	D-xylose ChEBI	-	builds acid from
[Ref.: #68005]	erythritol ChEBI	-	builds acid from
[Ref.: #68005]	esculin ChEBI	+	hydrolysis
[Ref.: #68005]	esculin ferric citrate	-	builds acid from
[Ref.: #68005]	galactitol ChEBI	-	builds acid from
[Ref.: #68005]	gentiobiose ChEBI	+	builds acid from
[Ref.: #68005]	glucose ChEBI	-	builds gas from
[Ref.: #68005]	glycerol ChEBI	-	builds acid from
[Ref.: #68005]	glycogen ChEBI	-	builds acid from
[Ref.: #68005]	hippurate ChEBI	-	reduction
[Ref.: #68005]	inulin ChEBI	-	builds acid from
[Ref.: #68005]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68005]	L-arabitol ChEBI	-	builds acid from
[Ref.: #68005]	L-fucose ChEBI	-	builds acid from
[Ref.: #68005]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #68005]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68005]	L-xylose ChEBI	-	builds acid from
[Ref.: #68005]	lactose ChEBI	+	builds acid from
[Ref.: #68005]	maltose ChEBI	+	builds acid from
[Ref.: #68005]	melezitose ChEBI	-	builds acid from
[Ref.: #68005]	melibiose ChEBI	-	builds acid from
[Ref.: #68005]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #68005]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #68005]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #68005]	myo-inositol ChEBI	-	builds acid from
[Ref.: #68005]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #68005]	nitrate ChEBI	-	reduction
[Ref.: #68005]	nitrite ChEBI	-	reduction
[Ref.: #68005]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #68005]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #68005]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #68005]	pyruvate ChEBI	-	assimilation
[Ref.: #68005]	raffinose ChEBI	-	builds acid from
[Ref.: #68005]	ribitol ChEBI	-	builds acid from
[Ref.: #68005]	salicin ChEBI	+	builds acid from
[Ref.: #68005]	starch ChEBI	-	builds acid from
[Ref.: #68005]	sucrose ChEBI	+	builds acid from
[Ref.: #68005]	trehalose ChEBI	+	builds acid from
[Ref.: #68005]	turanose ChEBI	-	builds acid from
[Ref.: #68005]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68005]		hydrogen sulfide ChEBI	yes
[Ref.: #68005]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68005]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68005]	catalase	-	1.11.1.6
[Ref.: #68005]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #68005]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68005]	Sample type/isolated from	traditional pickle, known as 'suancai' and is made from Chinese cabbage
[Ref.: #68005]	Geographic location (country and/or sea, region)	Heilongjiang Province
[Ref.: #68005]	Country	China
[Ref.: #68005]	Country ISO 3 Code	CHN
[Ref.: #68005]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC438522 (>99% sequence identity) for Companilactobacillus from Microbeatlas

Aquatic Samples	523
Soil Samples	475
Animal Samples	3246
Plant Samples	405
Total Samples	4649

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68005]	Lactobacillus sp. 395-6.2 gene for 16S ribosomal RNA, partial sequence	LC438522	1432	ENA	2559914 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68005]	Companilactobacillus huachuanensis 395-6.2	GCA_005404815	scaffold	GenBank	2559914 tax ID
[Ref.: #66792]	Lactobacillus sp. 395-6.2	2559914.3	wgs	PATRIC	2559914 tax ID	*

[Ref.: #68005]

GC-content

36.4 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Companilactobacillus huachuanensis 395-6.2 NCBI: GCA_005404815.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus sp. 395-6.2 PATRIC: 2559914.3
[Ref.: #69480]	motile	no	95.506	yes
[Ref.: #69480]	gram-positive	yes	95.395	yes
[Ref.: #69480]	anaerobic	no	92.309	yes
[Ref.: #69480]	aerobic	no	96.105	no
[Ref.: #69480]	halophile	yes	86.972	no
[Ref.: #69480]	spore-forming	no	94.24	yes
[Ref.: #69480]	glucose-util	yes	90.191	no
[Ref.: #69480]	flagellated	no	97.806	yes
[Ref.: #69480]	thermophile	no	99.459	no
[Ref.: #69480]	glucose-ferment	yes	85.399	no

Availability in culture collections External links

[Ref.: #68005]

Culture collection no.

CCM 8927, NCIMB 15188, LMG 31179

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68005

Mei Ling Fu, Chun Tao Gu: Lactobacillus huachuanensis sp. nov., isolated from Chinese traditional pickle. IJSEM 69: 2807 - 2814 2019 ( DOI 10.1099/ijsem.0.003563 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Companilactobacillus huachuanensis 395-6.2

Lactobacillus sp. 395-6.2

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