Name: Staphylococcus pseudoxylosus S04009
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166184

Type strain:

Species: Staphylococcus pseudoxylosus

Strain Designation: S04009

Culture col. no.: DSM 107950, CCUG 72763, NCTC 14184

NCBI tax ID(s): 2282419 (species)

SI-ID 409014

CCUG 72763

Section

Staphylococcus pseudoxylosus S04009 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from bovine mastitis.

Gram-positive
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus pseudoxylosus**
	Full Scientific Name (LPSN)	Staphylococcus pseudoxylosus MacFadyen et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67956]	Gram stain	positive

[Ref.: #67956]	Colony size	2 mm
[Ref.: #67956]	Colony color	non-pigmented
[Ref.: #67956]	Incubation period	0.75 day
[Ref.: #67956]	Cultivation medium used	Columbia horse blood agar

[Ref.: #67956]	Colony shape	irregular

[Ref.: #67956]

Pigment production

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67956]			optimum	37 °C

[Ref.: #67956]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67956]

Oxygen tolerance

facultative anaerobe

[Ref.: #67956]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67956]		NaCl		growth	6.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67956]	amygdalin ChEBI	-	builds acid from
[Ref.: #67956]	D-galactose ChEBI	-	builds acid from
[Ref.: #67956]	D-mannitol ChEBI	+	builds acid from
[Ref.: #67956]	D-mannose ChEBI	+	builds acid from
[Ref.: #67956]	D-ribose ChEBI	-	builds acid from
[Ref.: #67956]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #67956]	dextran ChEBI	-	builds acid from
[Ref.: #67956]	lactose ChEBI	+	builds acid from
[Ref.: #67956]	maltose ChEBI	+	builds acid from
[Ref.: #67956]	methyl beta-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #67956]	N-acetyl-D-glucosamine ChEBI	+	builds acid from
[Ref.: #67956]	pullulan ChEBI	-	builds acid from
[Ref.: #67956]	raffinose ChEBI	-	builds acid from
[Ref.: #67956]	salicin ChEBI	-	builds acid from
[Ref.: #67956]	sucrose ChEBI	+	builds acid from
[Ref.: #67956]	trehalose ChEBI	+	builds acid from
[Ref.: #67956]	xylose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #67956]	bacitracin ChEBI	yes
[Ref.: #67956]	chloramphenicol ChEBI	yes
[Ref.: #67956]	ciprofloxacin ChEBI	yes
[Ref.: #67956]	clindamycin ChEBI		yes
[Ref.: #67956]	fusidate ChEBI		yes
[Ref.: #67956]	gentamicin ChEBI	yes
[Ref.: #67956]	linezolid ChEBI	yes
[Ref.: #67956]	nitrofurantoin ChEBI		yes
[Ref.: #67956]	novobiocin ChEBI		yes
[Ref.: #67956]	optochin ChEBI		yes
[Ref.: #67956]	oxacillin ChEBI	yes
[Ref.: #67956]	penicillin g ChEBI		yes
[Ref.: #67956]	polymyxin b ChEBI	yes
[Ref.: #67956]	rifampicin ChEBI	yes
[Ref.: #67956]	teicoplanin ChEBI	yes
[Ref.: #67956]	tetracycline ChEBI		yes
[Ref.: #67956]	trimethoprim ChEBI	yes
[Ref.: #67956]	vancomycin ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #67956]	alanine phenylalanin proline arylamidase	-
[Ref.: #67956]	alpha-galactosidase	-	3.2.1.22
[Ref.: #67956]	alpha-glucosidase	-	3.2.1.20
[Ref.: #67956]	alpha-mannosidase	-	3.2.1.24
[Ref.: #67956]	beta-galactopyranosidase	-
[Ref.: #67956]	beta-galactosidase	+	3.2.1.23
[Ref.: #67956]	beta-glucuronidase	+	3.2.1.31
[Ref.: #67956]	beta-lactamase	-	3.5.2.6
[Ref.: #67956]	catalase	+	1.11.1.6
[Ref.: #67956]	coagulase	-
[Ref.: #67956]	DNase	-
[Ref.: #67956]	L-aspartate arylamidase	-	3.4.11.21
[Ref.: #67956]	l-pyrrolyldonyl-arylamidase	+
[Ref.: #67956]	leucine arylamidase	-	3.4.11.1
[Ref.: #67956]	phenylalanine arylamidase	-
[Ref.: #67956]	phosphatase	+
[Ref.: #67956]	phosphatidylinositol phospholipase C	-	3.1.4.11
[Ref.: #67956]	proline-arylamidase	-	3.4.11.5
[Ref.: #67956]	tyrosine arylamidase	-
[Ref.: #67956]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67956]	Sample type/isolated from	bovine mastitis
[Ref.: #67956]	Sampling date	2002
[Ref.: #67956]	Country	France
[Ref.: #67956]	Country ISO 3 Code	FRA
[Ref.: #67956]	Continent	Europe
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MH643903 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	1554
Soil Samples	930
Animal Samples	23674
Plant Samples	763
Total Samples	26921

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67956]	Staphylococcus sp. S04009 16S ribosomal RNA gene, partial sequence	MH643903	1500	ENA	2282419 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67956]	Staphylococcus pseudoxylosus S04009	GCA_003697915	contig	GenBank	2282419 tax ID

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GC-content

32.86 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Staphylococcus pseudoxylosus S04009 NCBI: GCA_003697915.1
[Ref.: #69480]	motile	no	89.589	no
[Ref.: #69480]	flagellated	no	89.845	no
[Ref.: #69480]	gram-positive	yes	91.202	yes
[Ref.: #69480]	anaerobic	no	99.37	yes
[Ref.: #69480]	aerobic	yes	90.784	yes
[Ref.: #69480]	halophile	yes	95.652	no
[Ref.: #69480]	spore-forming	no	91.968	yes
[Ref.: #69480]	glucose-util	yes	89.698	no
[Ref.: #69480]	thermophile	no	99.889	yes
[Ref.: #69480]	glucose-ferment	yes	85.607	no

Availability in culture collections External links

[Ref.: #67956]

Culture collection no.

DSM 107950, CCUG 72763, NCTC 14184

[Ref.: #114758]

SI-ID 409014

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Staphylococcus pseudoxylosus sp. nov., isolated from bovine mastitis.	MacFadyen AC, Leroy S, Harrison EM, Parkhill J, Holmes MA, Paterson GK	Int J Syst Evol Microbiol	10.1099/ijsem.0.003416	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67956

A. C. MacFadyen, S. Leroy, E. M. Harrison, J. Parkhill, M. A. Holmes, G. K. Paterson: Staphylococcus pseudoxylosus sp. nov., isolated from bovine mastitis. IJSEM 69: 2208 - 2213 2019 ( DOI 10.1099/ijsem.0.003416 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114758

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID409014.1 )

* These data were automatically processed and therefore are not curated

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