Name: Bacteroides sedimenti JCM 34007
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164708

Type strain:

Species: Bacteroides sedimenti

Culture col. no.: JCM 34007, KCTC 15656, NBRC 113168

Strain history: KCTC 15656 <-- N. Yoshida; Nagoya Inst. of Technol., Japan; YN3PY1.

NCBI tax ID(s): 2136147 (species)

Section

Bacteroides sedimenti JCM 34007 is a mesophilic bacterium that was isolated from Chloroethene-dechlorinating consortium originally enriched from river sediment from the Arako River.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Bacteroidaceae*
	Genus	*Bacteroides*
	Species	"Bacteroides sedimenti"
	Full Scientific Name (LPSN)	Bacteroides sedimenti Ismaeil et al. 2018

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-11 and MK-12

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Chloroethene-dechlorinating consortium originally enriched from river sediment from the Arako River
[Ref.: #67770]	Geographic location (country and/or sea, region)	Nagoya
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC377263 (>99% sequence identity) for Bacteroides from Microbeatlas

Aquatic Samples	160
Soil Samples	13
Animal Samples	32
Plant Samples	3
Total Samples	208

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacteroides sedimenti gene for 16S ribosomal RNA, partial sequence	LC377263	1445	ENA	2136147 tax ID

[Ref.: #67770]

GC-content

37.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 34007, KCTC 15656, NBRC 113168

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacteroides sedimenti sp. nov., isolated from a chloroethenes-dechlorinating consortium enriched from river sediment.	Ismaeil M, Yoshida N, Katayama A	J Microbiol	10.1007/s12275-018-8187-z	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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