Name: Chryseobacterium salivictor NBC 122
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164701

Type strain:

Species: Chryseobacterium salivictor

Strain Designation: NBC 122

Culture col. no.: JCM 33980, KCTC 72248

Strain history: H. Kim; NNIBR, South Korea; NBC122.

NCBI tax ID(s): 2547600 (species)

Section

Chryseobacterium salivictor NBC 122 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Freshwater of a branch of the Nakdong River in the Republic of Korea.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium salivictor**
	Full Scientific Name (LPSN)	Chryseobacterium salivictor Kim and Yu 2020

Information on morphological and physiological properties Morphology

[Ref.: #68346]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.992

[Ref.: #68346]	Cell length	1-1.7 µm

[Ref.: #68346]	Cell width	0.4-0.7 µm

[Ref.: #68346]	Cell shape	rod-shaped

[Ref.: #68346]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.505

[Ref.: #68346]	Colony color	pale yellow
[Ref.: #68346]	Colony shape	circular
[Ref.: #68346]	Incubation period	5 days
[Ref.: #68346]	Cultivation medium used	Reasoner's 2A agar (R2A)

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	25 °C
[Ref.: #68346]	growth	4-37 °C
[Ref.: #68346]	optimum	25 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68346]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68346]			optimum	7
[Ref.: #68346]			growth	5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68346]

Oxygen tolerance

aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.974
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68346]		NaCl		growth	0-3.5	%(w/v)
[Ref.: #68346]		NaCl		optimum	1	%(w/v)

[Ref.: #67770]	Observation	quinones: MK-6
[Ref.: #68346]	Observation	increase the biomass, germination rate, and length of Chinese cabbage grown under saline stress and normal conditions

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68346]	(-)-quinic acid ChEBI	+/-	carbon source
[Ref.: #68346]	acetic acid ChEBI	+	carbon source
[Ref.: #68346]	acetoacetate ChEBI	+	carbon source
[Ref.: #68346]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #68346]	alpha-lactose ChEBI	+/-	carbon source
[Ref.: #68346]	beta-D-glucuronic acid ChEBI	+/-	carbon source
[Ref.: #68346]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #68346]	casein	-	hydrolysis
[Ref.: #68346]	cellobiose ChEBI	+	carbon source
[Ref.: #68346]	D-fructose 6-phosphate ChEBI	+	carbon source
[Ref.: #68346]	D-galacturonic acid ChEBI	+/-	carbon source
[Ref.: #68346]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #68346]	D-mannose ChEBI	+	carbon source
[Ref.: #68346]	D-saccharate ChEBI	+	carbon source
[Ref.: #68346]	D-sorbitol ChEBI	+/-	carbon source
[Ref.: #68346]	D-trehalose ChEBI	+	carbon source
[Ref.: #68346]	dextrin ChEBI	+	carbon source
[Ref.: #68346]	dna ChEBI	+	hydrolysis
[Ref.: #68346]	esculin ChEBI	+	hydrolysis
[Ref.: #68346]	galactarate ChEBI	+/-	carbon source
[Ref.: #68346]	gelatin ChEBI	+	hydrolysis
[Ref.: #68346]	gelatin ChEBI	+	carbon source
[Ref.: #68346]	glycyl-L-proline ChEBI	+	carbon source
[Ref.: #68346]	inosine ChEBI	+/-	carbon source
[Ref.: #68346]	L-arginine ChEBI	+	carbon source
[Ref.: #68346]	L-aspartate ChEBI	+	carbon source
[Ref.: #68346]	L-glutamate ChEBI	+	carbon source
[Ref.: #68346]	L-histidine ChEBI	+/-	carbon source
[Ref.: #68346]	L-malate ChEBI	+/-	carbon source
[Ref.: #68346]	L-pyroglutamic acid ChEBI	+/-	carbon source
[Ref.: #68346]	maltose ChEBI	+	carbon source
[Ref.: #68346]	melibiose ChEBI	+/-	carbon source
[Ref.: #68346]	N-acetyl-beta-D-mannosamine ChEBI	+	carbon source
[Ref.: #68346]	n-acetyl-D-galactosamine ChEBI	+/-	carbon source
[Ref.: #68346]	n-acetyl-neuraminic acid	+/-	carbon source
[Ref.: #68346]	nitrate ChEBI	-	reduction
[Ref.: #68346]	pectin ChEBI	+	carbon source
[Ref.: #68346]	stachyose ChEBI	+	carbon source
[Ref.: #68346]	starch ChEBI	+	hydrolysis
[Ref.: #68346]	sucrose ChEBI	+/-	carbon source
[Ref.: #68346]	tween 40 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68346]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68346]	acid phosphatase	+	3.1.3.2
[Ref.: #68346]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68346]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #68346]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68346]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68346]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68346]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68346]	beta-galactosidase	-	3.2.1.23
[Ref.: #68346]	beta-glucosidase	-	3.2.1.21
[Ref.: #68346]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68346]	catalase	+	1.11.1.6
[Ref.: #68346]	cystine arylamidase	-	3.4.11.3
[Ref.: #68346]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68346]	esterase (C 4)	+
[Ref.: #68346]	esterase Lipase (C 8)	+
[Ref.: #68346]	leucine arylamidase	+	3.4.11.1
[Ref.: #68346]	lipase (C 14)	-
[Ref.: #68346]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68346]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68346]	trypsin	-	3.4.21.4
[Ref.: #68346]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68346]

Fatty acid	Percentage
C15:0 anteiso	17.4
C15:0 iso	14
C17:1 iso w9c / C16:0 10-methyl	11.3
C17:0 iso 3OH	10.1
C16:0 iso 3OH	9.5
C16:0 iso	8
C16:1 w7c/C16:1 w6c	6.2
C14:0 iso	5.3
C13:0 iso	2.9
C16:1 iso H	2.9
C17:0 2OH	2.4
C15:0 2OH	1.5
C17:1 anteiso w9c	1.4
C15:0 iso 3OH	1.3
C13:0 anteiso	1.1
C15:1 w6c	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Freshwater of a branch of the Nakdong River in the Republic of Korea

[Ref.: #68346]	Sample type/isolated from	freshwater
[Ref.: #68346]	Geographic location (country and/or sea, region)	Nakdong River
[Ref.: #68346]	Country	Republic of Korea
[Ref.: #68346]	Country ISO 3 Code	KOR
[Ref.: #68346]	Continent	Asia
[Ref.: #68346]	Geographic location	36.2689°/128.1600°
[Ref.: #68346]	Enrichment culture	R2A agar
[Ref.: #68346]	Enrichment culture temperature	25 ̊C
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68346]	Chryseobacterium sp. strain 122 16S ribosomal RNA gene, partial sequence	MK601659	1457	ENA	2547600 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68346]	Chryseobacterium salivictor NBC 122	GCA_004359195	complete	GenBank	2547600 tax ID

[Ref.: #67770]

GC-content

37.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium salivictor NBC 122 NCBI: GCA_004359195.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium salivictor NBC 122 NCBI: GCA_004359195.1
[Ref.: #69480]	motile	no	91.313	yes
[Ref.: #69480]	flagellated	no	96.969	yes
[Ref.: #69480]	gram-positive	no	98.179	no
[Ref.: #69480]	anaerobic	no	98.969	yes
[Ref.: #69480]	aerobic	yes	90.168	yes
[Ref.: #69480]	halophile	no	88.039	no
[Ref.: #69480]	spore-forming	no	95.402	no
[Ref.: #69480]	glucose-util	yes	84.833	no
[Ref.: #69480]	thermophile	no	99.055	no
[Ref.: #69480]	glucose-ferment	no	91.328	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33980, KCTC 72248

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium salivictor sp. nov., a plant-growth-promoting bacterium isolated from freshwater.	Kim H, Yu SM	Antonie Van Leeuwenhoek	10.1007/s10482-020-01411-8	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68346

Hyangmi Kim & Sang Mi Yu: Chryseobacterium salivictor sp. nov., a plant-growth-promoting bacterium isolated from freshwater. Antonie Van Leeuwenhoek 113: 989 - 995 2020 ( DOI 10.1007/s10482-020-01411-8 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Chryseobacterium salivictor in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF