Name: Lactiplantibacillus songbeiensis JCM 33829
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164669

Type strain:

Species: Lactiplantibacillus songbeiensis

Culture col. no.: JCM 33829, CCM 8931, LMG 31174, NCIMB 15189

Strain history: LMG 31174 <-- C. T. Gu; Coll. of Life Sci., Northeast Agric. Univ., China; 398-2.

NCBI tax ID(s): 2559920 (species)

Section

Lactiplantibacillus songbeiensis JCM 33829 is a mesophilic, Gram-positive bacterium that was isolated from Traditional pickle in Harbin.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactiplantibacillus*
	Species	**Lactiplantibacillus songbeiensis**
	Full Scientific Name (LPSN)	Lactiplantibacillus songbeiensis (Liu and Gu 2019) Zheng et al. 2020

Synonym

Lactobacillus songbeiensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.023

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Traditional pickle in Harbin
[Ref.: #67770]	Geographic location (country and/or sea, region)	Heilongjiang Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus sp. 398-2 gene for 16S ribosomal RNA, partial sequence	LC438523	1443	ENA	2559920 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactiplantibacillus songbeiensis 398-2	GCA_005405125	contig	GenBank	2559920 tax ID
[Ref.: #66792]	Lactobacillus sp. 398-2	2559920.3	wgs	PATRIC	2559920 tax ID	*

[Ref.: #67770]

GC-content

44.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus sp. 398-2 PATRIC: 2559920.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus sp. 398-2 PATRIC: 2559920.3
[Ref.: #69480]	motile	no	94.846	no
[Ref.: #69480]	gram-positive	yes	95.358	no
[Ref.: #69480]	anaerobic	no	88.702	no
[Ref.: #69480]	aerobic	no	98.493	no
[Ref.: #69480]	halophile	yes	81.876	no
[Ref.: #69480]	spore-forming	no	92.296	no
[Ref.: #69480]	glucose-util	yes	90.722	no
[Ref.: #69480]	flagellated	no	97.332	no
[Ref.: #69480]	thermophile	no	99.773	yes
[Ref.: #69480]	glucose-ferment	yes	81.755	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33829, CCM 8931, LMG 31174, NCIMB 15189

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus pingfangensis sp. nov., Lactobacillus daoliensis sp. nov., Lactobacillus nangangensis sp. nov., Lactobacillus daowaiensis sp. nov., Lactobacillus dongliensis sp. nov., Lactobacillus songbeiensis sp. nov. and Lactobacillus kaifaensis sp. nov., isolated from traditional Chinese pickle.	Liu DD, Gu CT	Int J Syst Evol Microbiol	10.1099/ijsem.0.003619	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Lactobacillus sp. 398-2

Lactobacillus sp. 398-2

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