Name: Lactiplantibacillus daoliensis JCM 33826
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164666

Type strain:

Species: Lactiplantibacillus daoliensis

Culture col. no.: JCM 33826, CCM 8934, LMG 31171, NCIMB 15181

Strain history: LMG 31171 <-- C. T. Gu; Coll. of Life Sci., Northeast Agric. Univ., China; 116-1A.

NCBI tax ID(s): 2559916 (species)

Section

Lactiplantibacillus daoliensis JCM 33826 is a mesophilic, Gram-positive bacterium that was isolated from Traditional pickle in Harbin.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactiplantibacillus*
	Species	**Lactiplantibacillus daoliensis**
	Full Scientific Name (LPSN)	Lactiplantibacillus daoliensis (Liu and Gu 2019) Zheng et al. 2020

Synonym

Lactobacillus daoliensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %97.209

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Traditional pickle in Harbin
[Ref.: #67770]	Geographic location (country and/or sea, region)	Heilongjiang Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC438516 (>99% sequence identity) for Lactobacillaceae from Microbeatlas

Aquatic Samples	4479
Soil Samples	2696
Animal Samples	29069
Plant Samples	2393
Total Samples	38637

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus sp. 116-1A gene for 16S ribosomal RNA, partial sequence	LC438516	1441	ENA	2559916 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactiplantibacillus daoliensis 116-1A	GCA_005405005	contig	GenBank	2559916 tax ID
[Ref.: #66792]	Lactobacillus sp. 116-1A	2559916.3	wgs	PATRIC	2559916 tax ID	*

[Ref.: #67770]

GC-content

43.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus sp. 116-1A PATRIC: 2559916.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus sp. 116-1A PATRIC: 2559916.3
[Ref.: #69480]	motile	no	94.479	no
[Ref.: #69480]	gram-positive	yes	96.802	no
[Ref.: #69480]	anaerobic	no	89.576	no
[Ref.: #69480]	aerobic	no	97.973	no
[Ref.: #69480]	halophile	yes	88.145	no
[Ref.: #69480]	spore-forming	no	95.785	no
[Ref.: #69480]	glucose-util	yes	92.068	no
[Ref.: #69480]	flagellated	no	97.789	no
[Ref.: #69480]	thermophile	no	99.734	yes
[Ref.: #69480]	glucose-ferment	yes	84.61	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33826, CCM 8934, LMG 31171, NCIMB 15181

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus pingfangensis sp. nov., Lactobacillus daoliensis sp. nov., Lactobacillus nangangensis sp. nov., Lactobacillus daowaiensis sp. nov., Lactobacillus dongliensis sp. nov., Lactobacillus songbeiensis sp. nov. and Lactobacillus kaifaensis sp. nov., isolated from traditional Chinese pickle.	Liu DD, Gu CT	Int J Syst Evol Microbiol	10.1099/ijsem.0.003619	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Lactobacillus sp. 116-1A

Lactobacillus sp. 116-1A

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