Name: Gracilibacillus oryzae JCM 33537
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164600

Type strain:

Species: Gracilibacillus oryzae

Culture col. no.: JCM 33537, ACCC 61556, CICC 24889

Strain history: X. Zhang; CAAS, China; TD8.

NCBI tax ID(s): 1672701 (species)

Section

Gracilibacillus oryzae JCM 33537 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Surface-sterilized rice seeds from Hunan.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Gracilibacillus*
	Species	**Gracilibacillus oryzae**
	Full Scientific Name (LPSN)	Gracilibacillus oryzae He et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %98.363

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Surface-sterilized rice seeds (Oryza sativa L.) from Hunan
[Ref.: #67770]	Host species	Oryza sativa
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MN540182 (>99% sequence identity) for Gracilibacillus from Microbeatlas

Aquatic Samples	110
Soil Samples	206
Animal Samples	29
Plant Samples	39
Total Samples	384

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gracilibacillus sp. TD8 16S ribosomal RNA gene, partial sequence	MN540182	1393	ENA	1672701 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gracilibacillus oryzae TD8	GCA_009498735	scaffold	GenBank	1672701 tax ID

[Ref.: #67770]

GC-content

37.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gracilibacillus oryzae TD8 NCBI: GCA_009498735.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gracilibacillus oryzae TD8 NCBI: GCA_009498735.1
[Ref.: #69480]	motile	yes	93.58	no
[Ref.: #69480]	flagellated	yes	91.617	no
[Ref.: #69480]	gram-positive	yes	88.853	no
[Ref.: #69480]	anaerobic	no	99.142	no
[Ref.: #69480]	aerobic	yes	88.553	no
[Ref.: #69480]	halophile	yes	84.827	no
[Ref.: #69480]	spore-forming	yes	91.363	no
[Ref.: #69480]	glucose-util	yes	88.645	no
[Ref.: #69480]	thermophile	no	99.81	yes
[Ref.: #69480]	glucose-ferment	no	83.785	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33537, ACCC 61556, CICC 24889

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gracilibacillus oryzae sp. nov., isolated from rice seeds.	He SW, Wang X, Guo HB, Han JG, Thin KK, Gao JS, Ma LA, Zhang XX	Int J Syst Evol Microbiol	10.1099/ijsem.0.004427	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Gracilibacillus oryzae TD8

Gracilibacillus oryzae TD8

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